Eric Rivals

发表

CRAC: A multi-purpose program to analyse large read collections

Eric Rivals, 2011 .

Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps

Eric Rivals, Raluca Uricaru, Alban Mancheron, 2010, RECOMB-CG.

A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections

Thierry Lecroq, Nicolas Philippe, Eric Rivals, 2012, ERCIM News.

Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings

Eric Rivals, Bastien Cazaux, Eric Rivals, 2014, Stringology.

Hierarchical Overlap Graph pdf

Eric Rivals, Bastien Cazaux, Eric Rivals, 2018, Inf. Process. Lett..

Comparison of minisatellites

Eric Rivals, Sèverine Bérard, Eric Rivals, 2002, RECOMB '02.

Indexing a large set of reads

Thierry Lecroq, Nicolas Philippe, Eric Rivals, 2011 .

LoRDEC: accurate and efficient long read error correction

Leena Salmela, Eric Rivals, Eric Rivals, 2014, Bioinform..

Relationship between superstring and compression measures: New insights on the greedy conjecture

Eric Rivals, Bastien Cazaux, Eric Rivals, 2017, Discret. Appl. Math..

Querying large read collections in main memory: a versatile data structure

Thierry Lecroq, Nicolas Philippe, Eric Rivals, 2011, BMC Bioinformatics.

Indexer des fragments d'ADN

Thierry Lecroq, Eric Rivals, Mikaël Salson, 2011 .

Read mapping on de Bruijn graphs

Pierre Peterlongo, Antoine Limasset, Eric Rivals, 2015, BMC Bioinformatics.

Complexities of the Centre and Median String Problems

François Nicolas, Eric Rivals, Eric Rivals, 2003, CPM.

A Survey On Algorithmic Aspects Of Tandem Repeats Evolution

Eric Rivals, Eric Rivals, 2004, Int. J. Found. Comput. Sci..

Greedy-reduction from Shortest Linear Superstring to Shortest Circular Superstring pdf

Eric Rivals, Bastien Cazaux, 2020, ArXiv.

Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data

Niko Välimäki, Eric Rivals, Eric Rivals, 2013, ISBRA.

Detecting microsatellites within genomes: significant variation among algorithms

Eric Rivals, Sébastien Leclercq, Philippe Jarne, 2007, BMC Bioinformatics.

Hardness of optimal spaced seed design

François Nicolas, Eric Rivals, Eric Rivals, 2005, J. Comput. Syst. Sci..

mpscan: Fast Localisation of Multiple Reads in Genomes

Jorma Tarhio, Leena Salmela, Eric Rivals, 2009, WABI.

Superstring Graph: A New Approach for Genome Assembly

Eric Rivals, Bastien Cazaux, Gustavo Sacomoto, 2016, AAIM.

Superstrings with multiplicities

Eric Rivals, Bastien Cazaux, Eric Rivals, 2018, CPM.

Accurate selfcorrection of errors in long reads using de Bruijn graphs

Esko Ukkonen, Leena Salmela, Eric Rivals, 2016 .

On the Distribution of the Number of Missing Words in Random Texts

Sven Rahmann, Eric Rivals, Eric Rivals, 2003, Combinatorics, Probability and Computing.

Modular Data Compression to Optimally Locate Regular Segments in Sequences. Application to DNA Sequence Analysis

Eric Rivals, Olivier Delgrange, O. Delgrange, 2005 .

Fast Discerning Repeats in DNA Sequences with a Compression Algorithm

Jean-Paul Delahaye, Max Dauchet, Eric Rivals, 1997 .

Hardness results for the center and median string problems under the weighted and unweighted edit distances

François Nicolas, Eric Rivals, Eric Rivals, 2005, J. Discrete Algorithms.

Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding

Eric Rivals, Bastien Cazaux, 2019, CPM.

Combinatorics of periods in strings

Sven Rahmann, Eric Rivals, Eric Rivals, 2001, J. Comb. Theory A.

The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings

Eric Rivals, Bastien Cazaux, Eric Rivals, 2016, Discret. Appl. Math..

CRAC: An integrated approach to analyse RNA-seq reads Additional File 4 Results on real RNA-seq data.

Nicolas Philippe, Eric Rivals, Thérèse Commes, 2013 .

Efficient Construction of Hierarchical Overlap Graphs

Kunsoo Park, Eric Rivals, Bastien Cazaux, 2020, SPIRE.

YOC, A new strategy for pairwise alignment of collinear genomes

Eric Rivals, Raluca Uricaru, Célia Michotey, 2015, BMC Bioinformatics.

Transformation distances: a family of dissimilarity measures based on movements of segments

Jean-Paul Delahaye, Jean-Stéphane Varré, Eric Rivals, 1999, Bioinform..

Location of Repetitive Regions in Sequences By Optimizing A Compression Method

Max Dauchet, Eric Rivals, Olivier Delgrange, 1998, Pacific Symposium on Biocomputing.

Strong link between BWT and XBW via Aho-Corasick automaton and applications to Run-Length Encoding pdf

Eric Rivals, Bastien Cazaux, Eric Rivals, 2018, ArXiv.

Optimal Representation in Average Using Kolmogorov Complexity

Jean-Paul Delahaye, Eric Rivals, Eric Rivals, 1998, Theor. Comput. Sci..

Rearrangement Scenarios Guided by Chromatin Structure

Krister M. Swenson, Eric Rivals, Pijus Simonaitis, 2017, bioRxiv.

Actes de la Réunion des Actions Spécifiques "Algorithmes et Séquences" et Indexation de Texte et Découverte de Motifs"

Gregory Kucherov, Thierry Lecroq, Eric Rivals, 2003 .

Detection of significant patterns by compression algorithms: the case of approximate tandem repeats in DNA sequences

Jean-Paul Delahaye, Max Dauchet, Eric Rivals, 1997, Comput. Appl. Biosci..

Shortest DNA Cyclic Cover in Compressed Space

Rodrigo Cánovas, Eric Rivals, Bastien Cazaux, 2016, 2016 Data Compression Conference (DCC).

Practical lower and upper bounds for the Shortest Linear Superstring

Eric Rivals, Bastien Cazaux, Samuel Juhel, 2018, SEA.

Linking indexing data structures to de Bruijn graphs: Construction and update

Thierry Lecroq, Eric Rivals, Bastien Cazaux, 2019, J. Comput. Syst. Sci..

Reverse engineering of compact suffix trees and links: A novel algorithm

Eric Rivals, Bastien Cazaux, Eric Rivals, 2014, J. Discrete Algorithms.

RNA-Ribo Explorer: interactive mining and visualisation of Ribosome profiling data

Alexandre David, Eric Rivals, Damien Paulet, 2018, bioRxiv.

A linear time algorithm for Shortest Cyclic Cover of Strings

Eric Rivals, Bastien Cazaux, 2016, J. Discrete Algorithms.

Detection of recombination in variable number tandem repeat sequences

Eric Rivals, Ezekiel F. Adebiyi, E. Adebiyi, 2007, South Afr. Comput. J..

Comparison of Minisatellites

Eric Rivals, Sèverine Bérard, 2003, J. Comput. Biol..

Hardness of optimal spaced seed design

François Nicolas, Eric Rivals, 2008, J. Comput. Syst. Sci..

A guaranteed compression scheme for repetitive DNA sequences

Jean-Paul Delahaye, Max Dauchet, Eric Rivals, 1996, Proceedings of Data Compression Conference - DCC '96.

q-gram based database searching using a suffix array (QUASAR)

Martin Vingron, Hans-Peter Lenhof, Paolo Ferragina, 1999, RECOMB.

A new tool for non-hybrid correction of long noisy reads

Eric Rivals, 2016 .

Longest common subsequence problem for unoriented and cyclic strings

François Nicolas, Eric Rivals, Eric Rivals, 2007, Theor. Comput. Sci..

Analysis of genomic data from high throughput sequencing: concepts and basic methods

Eric Rivals, 2011 .

Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree

Thierry Lecroq, Eric Rivals, Bastien Cazaux, 2015, LATA.

Approximate Common Intervals in Multiple Genome Comparison

Annie Chateau, Eric Rivals, Pierre Riou, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees

Eric Rivals, Bastien Cazaux, Guillaume Castel, 2019, Bioinform..

Combinatorics of Periods in Strings

Sven Rahmann, Eric Rivals, 2001, ICALP.

LoRDEC: a tool for correcting errors in long sequencing reads

Eric Rivals, 2015 .

Rapid screening and detection of inter-type viral recombinants using phylo-k-mers

Eric Rivals, Guillaume E. Scholz, Benjamin Linard, 2020, bioRxiv.

The transformation distance: A dissimilarity measure based an movements of segments

Jean-Paul Delahaye, Jean-Stéphane Varré, Eric Rivals, 1998, German Conference on Bioinformatics.

Correction of long sequencing reads: a novel approach

Eric Rivals, 2015 .

Tiling an Interval of the Discrete Line

Olivier Bodini, Eric Rivals, Eric Rivals, 2006, CPM.

From Indexing Data Structures to de Bruijn Graphs

Thierry Lecroq, Eric Rivals, Bastien Cazaux, 2014, CPM.

Reliable Bacterial Genome Comparison Tools

Eric Rivals, Raluca Uricaru, Alban Mancheron, 2010, ERCIM News.

Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps

Eric Rivals, Raluca Uricaru, Alban Mancheron, 2010, RECOMB-CG.

High performance text indexing and applications in life sciences

Eric Rivals, 2019 .

STAR: an algorithm to Search for Tandem Approximate Repeats

Eric Rivals, Olivier Delgrange, O. Delgrange, 2004, Bioinform..

Hybrid and non hybrid error correction for long reads: LoRDEC and LoRMA

Eric Rivals, 2016 .

Fast and Accurate Genome-Scale Identification of DNA-Binding Sites

David Martin, Eric Rivals, Vincent Maillol, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Full Compressed Affix Tree Representations

Rodrigo Cánovas, Eric Rivals, 2017, 2017 Data Compression Conference (DCC).

CRAC, a software for analyzing RNA-seq reads

Nicolas Philippe, Eric Rivals, Mikaël Salson, 2013 .

Exact and Efficient Computation of the Expected Number of Missing and Common Words in Random Texts

Sven Rahmann, Eric Rivals, Eric Rivals, 2000, CPM.

The Compressed Overlap Index pdf

Rodrigo Cánovas, Eric Rivals, Bastien Cazaux, 2017, ArXiv.

A Linear Time Algorithm for Constructing Hierarchical Overlap Graphs

Kunsoo Park, Eric Rivals, Bastien Cazaux, 2021, CPM.

Algorithmes de compression et applications à l'analyse de séquences génétiques

Eric Rivals, 1996 .

Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome

Eric Rivals, Alban Mancheron, Thérèse Commes, 2013, Nucleic acids research.

An integrated approach to read analysis

Eric Rivals, 2010 .

De novo assembly of viral quasispecies using overlap graphs

Alexander Schönhuth, Eric Rivals, Jasmijn A Baaijens, 2017, bioRxiv.

An alternative approach to multiple genome comparison

Eric Rivals, Raluca Uricaru, Alban Mancheron, 2011, Nucleic acids research.

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.

Eric Rivals, Eric Rivals, M. Méchali, 2011, Genome research.

A Fast and Specific Alignment Method for Minisatellite Maps

Olivier Gascuel, François Nicolas, Eric Rivals, 2006 .

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

Eric Rivals, Pengyi Yang, Christopher A. Lavender, 2018 .

A first step toward chromosome analysis by compression algorithms

Max Dauchet, Eric Rivals, Olivier Delgrange, 1995, Proceedings First International Symposium on Intelligence in Neural and Biological Systems. INBS'95.

Ribo-seq enlightens codon usage bias

Eric Rivals, Alexandre David, Damien Paulet, 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.

The Expected Number of Missing Words in a Random Text

Sven Rahmann, Eric Rivals, Eric Rivals, 2000 .

A Fast and Specific Alignment Method for Minisatellite Maps

Olivier Gascuel, François Nicolas, Eric Rivals, 2006, Evolutionary bioinformatics online.

Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies

Eric Rivals, A. Jeffreys, F. Bonhomme, 2007, Genome Biology.

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Hervé Moreau, Stephane Rombauts, Wendy Schackwitz, 2014, BMC Genomics.

The Transformation Distance

Jean-Stéphane Varré, Eric Rivals, Eric Rivals, 1997 .