Clarisse G. Ricci

发表

Docking Studies on DNA-Ligand Interactions: Building and Application of a Protocol To Identify the Binding Mode

Paulo A. Netz, Clarisse G. Ricci, P. Netz, 2009, J. Chem. Inf. Model..

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

J. Andrew McCammon, Jennifer A. Doudna, Giulia Palermo, 2018, Quarterly Reviews of Biophysics.

Allosteric Pathways in the PPAR gamma-RXR alpha nuclear receptor complex

Victor S. Batista, Ivan Rivalta, Munir S. Skaf, 2016 .

Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics

J. Andrew McCammon, Jennifer A. Doudna, Giulia Palermo, 2019, ACS central science.

Allosteric Pathways in the PPARγ-RXRα nuclear receptor complex

Clarisse G. Ricci, Rodrigo L. Silveira, I. Rivalta, 2016, Scientific Reports.

Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9

J Andrew McCammon, Giulia Palermo, Victor S Batista, 2017, Journal of the American Chemical Society.

The invisible dance of CRISPR-Cas9. Simulations unveil the molecular side of the gene-editing revolution.

Clarisse G. Ricci, J. Mccammon, G. Palermo, 2019, Physics today.

PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period

Clarisse G. Ricci, J. Mccammon, S. Tripathi, 2022, bioRxiv.

Simulation of the interactions between Tröger bases and DNA

Clarisse G. Ricci, P. Netz, 2012 .

Casein kinase 1 dynamics underlie substrate selectivity and the PER2 circadian phosphoswitch

Clarisse G. Ricci, S. Tripathi, D. Virshup, 2020, eLife.

Casein Kinase 1 dynamics underlie the PER2 circadian phosphoswitch

Clarisse G. Ricci, S. Tripathi, D. Virshup, 2019, bioRxiv.

Molecular mechanism of off-target effects in CRISPR-Cas9

Clarisse G. Ricci, J. Mccammon, J. Doudna, 2018, bioRxiv.

S0033583518000070jrv 1..11

Clarisse G. Ricci, J. Mccammon, J. Doudna, 2018 .

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

J Andrew McCammon, Giulia Palermo, Victor S Batista, 2018, Quarterly Reviews of Biophysics.

Molecular dynamics of DNA: comparison of force fields and terminal nucleotide definitions.

Clarisse G. Ricci, Melina Mottin, M. Mottin, 2010, The journal of physical chemistry. B.

RelA-Containing NFκB Dimers Have Strikingly Different DNA-Binding Cavities in the Absence of DNA.

Elizabeth A Komives, Wei Chen, Clarisse G. Ricci, 2018, Journal of molecular biology.

DNA and IκBα Both Induce Long-Range Conformational Changes in NFκB.

Elizabeth A Komives, Wei Chen, Clarisse G. Ricci, 2017, Journal of molecular biology.

Molecular mechanism of peroxisome proliferator-activated receptor α activation by WY14643: a new mode of ligand recognition and receptor stabilization.

Clarisse G. Ricci, P. Webb, I. Polikarpov, 2013, Journal of molecular biology.

A thrombin inhibitor from the gut of Boophilus microplus ticks

Clarisse G. Ricci, M. Berger, C. Termignoni, 2007, Experimental and Applied Acarology.

Tailoring the Variational Implicit Solvent Method for New Challenges: Biomolecular Recognition and Assembly

Clarisse G. Ricci, Li-Tien Cheng, J. Mccammon, 2018, Front. Mol. Biosci..

CHARMM Force Field Parameterization of Peroxisome Proliferator-Activated Receptor γ Ligands

Clarisse G. Ricci, M. Skaf, M. Mottin, 2016, International journal of molecular sciences.

“Martinizing” the Variational Implicit Solvent Method (VISM): Solvation Free Energy for Coarse-Grained Proteins

Li-Tien Cheng, J Andrew McCammon, Bo Li, 2017, The journal of physical chemistry. B.

Coupling Monte Carlo, Variational Implicit Solvation, and Binary Level-Set for Simulations of Biomolecular Binding.

Clarisse G. Ricci, Li-Tien Cheng, J. Mccammon, 2021, Journal of chemical theory and computation.

Heterogeneous Solvation in Distinctive Protein-Protein Interfaces Revealed by Molecular Dynamics Simulations.

Clarisse G. Ricci, J. Mccammon, J. McCammon, 2018, The journal of physical chemistry. B.

Heterogeneous Solvation in Distinctive Protein-Protein Interfaces Revealed by Molecular Dynamics Simulations.

Clarisse G. Ricci, J. McCammon, 2018, The journal of physical chemistry. B.

PERIOD phosphorylation leads to feedback inhibition of CK1 activity to control circadian period.

Clarisse G. Ricci, S. Tripathi, D. Virshup, 2023, Molecular cell.

Docking Studies on DNA-Ligand Interactions: Building and Application of a Protocol To Identify the Binding Mode

Clarisse G. Ricci, P. Netz, 2009, J. Chem. Inf. Model..

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

Clarisse G. Ricci, J. Doudna, M. Jinek, 2018, Quarterly Reviews of Biophysics.