Andrew E. Torda

发表

Not assessing the efficiency of multiple sequence alignment programs

Andrew E. Torda, 2014, Algorithms for Molecular Biology.

11th German Conference on Chemoinformatics (GCC 2015)

Timothy Clark, Jonathan W. Essex, Peter Kolb, 2016, J. Cheminformatics.

Local elevation: A method for improving the searching properties of molecular dynamics simulation

Andrew E. Torda, Wilfred F. van Gunsteren, Thomas Huber, 1994, J. Comput. Aided Mol. Des..

Protein sequence threading, the alignment problem, and a two‐step strategy

Andrew E. Torda, Thomas Huber, T. Huber, 1999 .

Sausage: protein threading with flexible force fields

Andrew E. Torda, Thomas Huber, Anthony J. Russell, 1999, Bioinform..

THE REFINEMENT OF NMR STRUCTURES BY MOLECULAR-DYNAMICS SIMULATION

Andrew E. Torda, Wilfred F. van Gunsteren, W. F. Gunsteren, 1991 .

Andrew E. Torda, Zsuzsanna Dosztányi, Z. Dosztányi, 2001, Bioinform..

Protein folding force fields: Optimisation and optimism

Andrew E. Torda, James B. Procter, Mark James Abraham, 2001 .

Algorithms for clustering molecular dynamics configurations

Andrew E. Torda, Wilfred F. van Gunsteren, W. F. Gunsteren, 1994, J. Comput. Chem..

Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices

Andrew E. Torda, James B. Procter, Thomas Huber, 2004, Nucleic Acids Res..

Modifications to glucose-6-phosphate dehydrogenase for industrial applications: predictions and tests

Andrew E. Torda, Jan Simons, Martin Mosisch, 2013, Journal of Cheminformatics.

The LUX Score: A Metric for Lipidome Homology

Andrew E. Torda, Chakravarthy Marella, Dominik Schwudke, 2015, bioRxiv.

Fast alignment and comparison of RNA structures

Andrew E. Torda, Stefan Bienert, Tim Wiegels, 2013, Bioinform..

German Conference on Bioinformatics (GCB 05)

Thomas Lengauer, Andrew E. Torda, Thomas Lengauer, 2006 .

RNA secondary structure diagrams for very large molecules: RNAfdl

Andrew E. Torda, Tim Wiegels, Nikolai Hecker, 2013, Bioinform..

Protein sequence and structure alignments within one framework

Andrew E. Torda, Gundolf Schenk, Thomas Margraf, 2008, Algorithms for Molecular Biology.

The GROMOS biomolecular simulation program package

Andrew E. Torda, Philippe H. Hünenberger, Alan E. Mark, 1999 .

Protein structure prediction by threading: Force field philosophy, approaches to alignment

Andrew E. Torda, Thomas Huber, T. Huber, 2001 .

Editorial

Thomas Lengauer, Andrew E. Torda, 2006, Bioinform..

Protein sequence threading, the alignment problem, and a two-step strategy*This article includes Supplementary Material available from the author upon request or via the Internet at ftp.wiley.com/public/journals/jcc/suppmat/20/1455 or http://journals.wiley.com/jcc/

Andrew E. Torda, Thomas Huber, 1999 .

The SALAMI protein structure search server

Andrew E. Torda, Gundolf Schenk, Thomas Margraf, 2009, Nucleic Acids Res..

Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005

Matthias Rarey, Andrew E. Torda, Stefan Kurtz, 2005, German Conference on Bioinformatics.

RNA secondary structure prediction using a self‐consistent mean field approach

Andrew E. Torda, Jens Kleesiek, A. Torda, 2009, J. Comput. Chem..

Protein sequence threading, the alignment problem, and a two-step strategy

Andrew E. Torda, Thomas Huber, T. Huber, 1999, J. Comput. Chem..

Biomolecular modelling: Overview of types of methods to search and sample conformational space

Andrew E. Torda, Thomas Huber, W. F. van Gunsteren, 2008 .

Parametrisation of time-averaged distance restraints in MD simulations

Andrew E. Torda, W. F. Gunsteren, A. Torda, 1995, Journal of biomolecular NMR.

Structure Determination by NMR: The Modeling of NMR Parameters as Ensemble Averages

Andrew E. Torda, Ruud M. Scheek, W. F. van Gunsteren, 1991 .

Biased Monte Carlo optimization of protein sequences

Andrew E. Torda, Paul M. G. Curmi, P. Curmi, 2000 .

RNA Aptamer Design

Andrew E. Torda, Ulrich Hahn, Cindy Meyer, 2013 .

Structure optimization combining soft-core interaction functions, the diffusion equation method, and molecular dynamics

Andrew E. Torda, Thomas Huber, Wilfred F. van Gunsteren, 1997 .