Kam Y. J. Zhang

发表

Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2016, J. Chem. Inf. Model..

Entropy-accelerated exact clustering of protein decoys

Yong Zhou, Kam Y. J. Zhang, Francois Berenger, 2011, Bioinform..

Combining in silico and in cerebro approaches for virtual screening and pose prediction in SAMPL4

Ashutosh Kumar, Kam Y. J. Zhang, Francois Berenger, 2014, Journal of Computer-Aided Molecular Design.

Computational fragment-based screening using RosettaLigand: the SAMPL3 challenge

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2012, Journal of Computer-Aided Molecular Design.

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2018, Journal of Computer-Aided Molecular Design.

Identification of SUMO activating enzyme 1 inhibitors utilizing virtual screening approach

Minoru Yoshida, Ashutosh Kumar, Kam Y. J. Zhang, 2014, Journal of Cheminformatics.

A cross docking pipeline for improving pose prediction and virtual screening performance

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2017, Journal of Computer-Aided Molecular Design.

Chemoinformatics and structural bioinformatics in OCaml

Yoshihiro Yamanishi, Kam Y. J. Zhang, Francois Berenger, 2019, Journal of Cheminformatics.

Identification of 1, 2, 5-Oxadiazoles as a New Class of SENP2 Inhibitors Using Structure Based Virtual Screening

Minoru Yoshida, Ashutosh Kumar, Kam Y. J. Zhang, 2014, J. Chem. Inf. Model..

A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening

Kam Y. J. Zhang, Francois Berenger, Arnout R. D. Voet, 2014, Journal of Cheminformatics.

PAR: a PARallel and distributed job crusher

Camille Coti, Kam Y. J. Zhang, Francois Berenger, 2010, Bioinform..

Discovery of Fungal Denitrification Inhibitors by Targeting Copper Nitrite Reductase from Fusarium oxysporum

Minoru Yoshida, Ashutosh Kumar, Kam Y. J. Zhang, 2017, J. Chem. Inf. Model..

Durandal: Fast exact clustering of protein decoys

Yong Zhou, Kam Y. J. Zhang, Francois Berenger, 2012, J. Comput. Chem..

A pose prediction approach based on ligand 3D shape similarity

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2016, Journal of Computer-Aided Molecular Design.

Identification of Sumoylation Activating Enzyme 1 Inhibitors by Structure-Based Virtual Screening

Minoru Yoshida, Ashutosh Kumar, Kam Y. J. Zhang, 2013, J. Chem. Inf. Model..

Population-Based Sampling and Fragment-Based De Novo Protein Structure Prediction

Kam Y. J. Zhang, David Simoncini, D. Simoncini, 2019, Encyclopedia of Bioinformatics and Computational Biology.

A Probabilistic Fragment-Based Protein Structure Prediction Algorithm

Kam Y. J. Zhang, Francois Berenger, Rojan Shrestha, 2012, PloS one.

Investigation on the Effect of Key Water Molecules on Docking Performance in CSARdock Exercise

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2013, J. Chem. Inf. Model..

Prospective evaluation of shape similarity based pose prediction method in D3R Grand Challenge 2015

Ashutosh Kumar, Kam Y. J. Zhang, 2016, Journal of Computer-Aided Molecular Design.

Efficient Sampling in Fragment-Based Protein Structure Prediction Using an Estimation of Distribution Algorithm

Kam Y. J. Zhang, David Simoncini, D. Simoncini, 2013, PloS one.

A Novel Scaffold for Developing Specific or Broad-Spectrum Chitinase Inhibitors

Ashutosh Kumar, Kam Y. J. Zhang, Xi Jiang, 2016, J. Chem. Inf. Model..

Advances in the Development of Shape Similarity Methods and Their Application in Drug Discovery

Ashutosh Kumar, Kam Y. J. Zhang, Ashutosh Kumar, 2018, Front. Chem..

Identification of Sumoylation Inhibitors Targeting a Predicted Pocket in Ubc9

Minoru Yoshida, Ashutosh Kumar, Kam Y. J. Zhang, 2014, J. Chem. Inf. Model..

ProFitFun: a protein tertiary structure fitness function for quantifying the accuracies of model structures

Kam Y. J. Zhang, Rahul Kaushik, 2022, Bioinform..

An integrated computational pipeline for designing high-affinity nanobodies with expanded genetic codes

Kam Y. J. Zhang, Kouhei Tsumoto, Satoru Nagatoishi, 2021, Briefings Bioinform..

Insights into the evolutionary forces that shape the codon usage in the viral genome segments encoding intrinsically disordered protein regions

Sonia Longhi, Naveen Kumar, Kam Y. J. Zhang, 2021, Briefings Bioinform..

Lean-Docking: Exploiting Ligands' Predicted Docking Scores to Accelerate Molecular Docking

Yoshihiro Yamanishi, Kam Y. J. Zhang, Francois Berenger, 2021, J. Chem. Inf. Model..

Improving fragment quality for de novo structure prediction

Kam Y. J. Zhang, Rojan Shrestha, K. Y. Zhang, 2014, Proteins.

Accurate computer-based design of a new backbone conformation in the second turn of protein L.

Kam Y. J. Zhang, David E. Kim, D. Baker, 2002, Journal of molecular biology.

Keynote review: phosphodiesterase-4 as a therapeutic target.

Kam Y. J. Zhang, M. Houslay, P. Schafer, 2005, Drug discovery today.

Phosphodiesterase-4 as a potential drug target

Kam Y. J. Zhang, G. Bollag, P. Ibrahim, 2005, Expert opinion on therapeutic targets.

A fragmentation and reassembly method for ab initio phasing.

Kam Y. J. Zhang, Rojan Shrestha, 2015, Acta Crystallographica Section D: Biological Crystallography.

Fragger: a protein fragment picker for structural queries

Kam Y. J. Zhang, F. Berenger, Rojan Shrestha, 2017, F1000Research.

Structural basis for the activity of drugs that inhibit phosphodiesterases.

Kam Y. J. Zhang, Sung-Hou Kim, M. Milburn, 2004, Structure.

Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2

Kam Y. J. Zhang, T. Tripathi, P. Kalita, 2020, Microbial Pathogenesis.

Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma

Kam Y. J. Zhang, K. Flaherty, J. Sosman, 2010, Nature.

Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent

Shenghua Shi, Kam Y. J. Zhang, Sarah Will, 2009, Proceedings of the National Academy of Sciences.

Electrostatic Similarities between Protein and Small Molecule Ligands Facilitate the Design of Protein-Protein Interaction Inhibitors

Kam Y. J. Zhang, Francois Berenger, Arnout Voet, 2013, PloS one.

Human Chitinases: Structure, Function, and Inhibitor Discovery.

Kam Y. J. Zhang, Ashutosh Kumar, 2019, Advances in experimental medicine and biology.

Kam Y. J. Zhang, R. V. Omkumar, C. Sadasivan, 2021, International journal of biological macromolecules.

A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design

Kam Y. J. Zhang, Chao Zhang, Kam Y J Zhang, 2005, Nature Biotechnology.

Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity

Kam Y. J. Zhang, James Tsai, Nikolas K. Haass, 2008, Proceedings of the National Academy of Sciences.

Antimycin A mimics a cell-death-inducing Bcl-2 homology domain 3

Kam Y. J. Zhang, David M. Hockenbery, J. Zimmerberg, 2001, Nature Cell Biology.

A protein sequence fitness function for identifying natural and nonnatural proteins

Kam Y. J. Zhang, R. Kaushik, 2020, Proteins.

Computational design of a self-assembling symmetrical β-propeller protein

Hiroki Noguchi, Kam Y. J. Zhang, David Simoncini, 2014, Proceedings of the National Academy of Sciences.

Hierarchical virtual screening approaches in small molecule drug discovery

Kam Y. J. Zhang, Ashutosh Kumar, Kam Y J Zhang, 2014, Methods.

Pharmacophore modeling: advances, limitations, and current utility in drug discovery

Kam Y. J. Zhang, Xiao Yin Lee, Arnout Voet, 2014 .

Pharmacophore modelling as a virtual screening tool for the discovery of small molecule protein-protein interaction inhibitors.

Kam Y. J. Zhang, A. Voet, 2012, Current pharmaceutical design.

Neuroprotective derivatives of tacrine that target NMDA receptor and acetyl cholinesterase - Design, synthesis and biological evaluation

Kam Y. J. Zhang, R. V. Omkumar, C. Sadasivan, 2021, bioRxiv.

Design and pharmacology of a highly specific dual FMS and KIT kinase inhibitor

Kam Y. J. Zhang, G. Habets, P. Hirth, 2013, Proceedings of the National Academy of Sciences.

A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases.

Kam Y. J. Zhang, Chao Zhang, Gideon Bollag, 2004, Molecular cell.

Quality Assessment of Predicted Protein Models Using Energies Calculated by the Fragment Molecular Orbital Method

Kam Y. J. Zhang, Shinichiro Nakamura, H. Nakata, 2015, Molecular informatics.

Understanding the Assembly of an Artificial Protein Nanotube

Kam Y. J. Zhang, J. Heddle, A. Voet, 2016 .

ATP7A Clinical Genetics Resource – A comprehensive clinically annotated database and resource for genetic variants in ATP7A gene

Kam Y. J. Zhang, V. Scaria, K. V. Dileep, 2020, Computational and structural biotechnology journal.

Advances in the development of SUMO specific protease (SENP) inhibitors

Kam Y. J. Zhang, Ashutosh Kumar, 2015, Computational and structural biotechnology journal.

Identification of quinazolinyloxy biaryl urea as a new class of SUMO activating enzyme 1 inhibitors.

Kam Y. J. Zhang, Ashutosh Kumar, Minoru Yoshida, 2013, Bioorganic & medicinal chemistry letters.

Computational Investigation of SENP:SUMO Protein‐Protein Interaction for Structure Based Drug Design

Kam Y. J. Zhang, Ashutosh Kumar, 2013, Molecular informatics.

The Discovery of Novel Human Androgen Receptor Antagonist Chemotypes Using a Combined Pharmacophore Screening Procedure

Kam Y. J. Zhang, F. Claessens, A. Voet, 2013, ChemMedChem.

Cell-free mutant analysis combined with structure prediction of a lasso peptide biosynthetic protein B2

Kam Y. J. Zhang, K. Severinov, S. Dubiley, 2022, bioRxiv.

Crystal structure of human acetylcholinesterase in complex with tacrine: Implications for drug discovery.

Kam Y. J. Zhang, M. Shirouzu, K. Ihara, 2022, International journal of biological macromolecules.

Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors.

Kam Y. J. Zhang, Jay W. Shin, M. Shirouzu, 2020, International journal of biological macromolecules.

EC313-a tissue selective SPRM reduces the growth and proliferation of uterine fibroids in a human uterine fibroid tissue xenograft model

Kam Y. J. Zhang, P. Binkley, R. Schenken, 2019, Scientific Reports.

Computational design of a symmetrical β-trefoil lectin with cancer cell binding activity

Kam Y. J. Zhang, J. Tame, A. Voet, 2017, Scientific Reports.

Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2

Kam Y. J. Zhang, T. Tripathi, P. Kalita, 2020, Microbial Pathogenesis.

Identification of a Selective RelA Inhibitor Based on DSE-FRET Screening Methods

Kam Y. J. Zhang, Ashutosh Kumar, Minoru Yoshida, 2020, International journal of molecular sciences.

Discovery of small molecule inhibitors targeting the SUMO–SIM interaction using a protein interface consensus approach

Kam Y. J. Zhang, T. Kigawa, A. Voet, 2014 .

Cryo-EM structure of the human ELMO1-DOCK5-Rac1 complex

Kam Y. J. Zhang, M. Shirouzu, R. Kaushik, 2021, Science Advances.

Computational design of symmetrical eight-bladed Beta-propeller proteins

Kam Y. J. Zhang, T. Schiex, J. Tame, 2019 .

Crystal Structure of Phosphodiesterase Families and the Potential for Rational Drug Design

Kam Y. J. Zhang, 2006 .

The crystal and solution structure of YdiE from Escherichia coli.

Kam Y. J. Zhang, Rojan Shrestha, J. Tame, 2015, Acta crystallographica. Section F, Structural biology communications.

Targeting LIF/LIFR signaling in cancer

Kam Y. J. Zhang, R. Vadlamudi, H. Nair, 2021, Genes & diseases.

Spectomycin B1 as a novel SUMOylation inhibitor that directly binds to SUMO E2.

Kam Y. J. Zhang, K. Shin‐ya, Ashutosh Kumar, 2013, ACS chemical biology.

Spectomycin B 1 as a Novel SUMOylation Inhibitor That Directly Binds to SUMO E 2

Kam Y. J. Zhang, K. Shin‐ya, Ashutosh Kumar, 2013 .

An integrated fragment based screening approach for the discovery of small molecule modulators of the VWF-GPIbα interaction.

Kam Y. J. Zhang, A. Voet, M. de Maeyer, 2012, Chemical communications.

Tumor Derived Extracellular Vesicles Drive T Cell Exhaustion in Tumor Microenvironment through Sphingosine Mediated Signaling and Impacting Immunotherapy Outcomes in Ovarian Cancer

Kam Y. J. Zhang, D. Di Vizio, B. Volkman, 2022, Advanced science.

Mechanistic insights into the loss-of-function mechanisms of rare human D-amino acid oxidase variants implicated in amyotrophic lateral sclerosis

Kam Y. J. Zhang, A. Padhi, 2020, Scientific Reports.

The Effect of F877L and T878A Mutations on Androgen Receptor Response to Enzalutamide

Kam Y. J. Zhang, R. Houtman, A. Houtsmuller, 2016, Molecular Cancer Therapeutics.

Neuroprotective derivatives of tacrine that target NMDA receptor and acetyl cholinesterase – Design, synthesis and biological evaluation

Kam Y. J. Zhang, R. V. Omkumar, C. Sadasivan, 2021, Computational and structural biotechnology journal.

Synthesis, cholinesterase inhibition and molecular modelling studies of coumarin linked thiourea derivatives.

Kam Y. J. Zhang, A. Saeed, M. Muddassar, 2015, Bioorganic chemistry.

Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein.

Hiroki Noguchi, Kam Y. J. Zhang, Kam Y J Zhang, 2015, Angewandte Chemie.

Molecular dynamics simulations: Principles, methods, and applications in protein conformational dynamics

Kam Y. J. Zhang, A. Padhi, Matej Janezic, 2022, Advances in Protein Molecular and Structural Biology Methods.

Understanding the molecular interactions of inhibitors against Bla1 beta-lactamase towards unraveling the mechanism of antimicrobial resistance.

Kam Y. J. Zhang, D. Ghosh, P. Roy, 2021, International journal of biological macromolecules.

Evolutionary and codon usage preference insights into spike glycoprotein of SARS-CoV-2

Kam Y. J. Zhang, R. Tiwari, K. Dhama, 2020, Briefings Bioinform..

A comprehensive characterization of novel CYP-BM3 homolog (CYP-BA) from Bacillus aryabhattai.

Kam Y. J. Zhang, Diptarka Dasgupta, V. Junghare, 2021, Enzyme and microbial technology.

Computational design of a symmetrical β-trefoil lectin with cancer cell binding activity

Kam Y. J. Zhang, J. Tame, A. Voet, 2017, Scientific Reports.

CDC25A-inhibitory RE derivatives bind to pocket adjacent to the catalytic site.

Kam Y. J. Zhang, M. Sodeoka, M. Muddassar, 2013, Molecular bioSystems.

Germline KRAS mutations cause Noonan syndrome

Kam Y. J. Zhang, Erik Sistermans, Kam Y J Zhang, 2006, Nature Genetics.

A loss-of-function variant in SUV39H2 identified in autism-spectrum disorder causes altered H3K9 trimethylation and dysregulation of protocadherin β-cluster genes in the developing brain

Kam Y. J. Zhang, Toshihiro Endo, H. Kuwabara, 2021, Molecular Psychiatry.

A variant in human AIOLOS impairs adaptive immunity by interfering with IKAROS

Kam Y. J. Zhang, J. Casanova, O. Ohara, 2021, Nature Immunology.

Mcl-1 is required for Akata6 B-lymphoma cell survival and is converted to a cell death molecule by efficient caspase-mediated cleavage

Kam Y. J. Zhang, R. Craig, G. Packham, 2004, Oncogene.

Glu-108 is essential for subunit assembly and dimer stability of D-phosphoglycerate dehydrogenase from Entamoeba histolytica.

Kam Y. J. Zhang, Ashutosh Kumar, T. Nozaki, 2012, Molecular and biochemical parasitology.

Crystal structure of E. coli β–carbonic anhydrase, an enzyme with an unusual pH–dependent activity

Kam Y. J. Zhang, M. Cronk, J. Endrizzi, 2001, Protein science : a publication of the Protein Society.

Novel protein-protein interactions between Entamoeba histolyticad-phosphoglycerate dehydrogenase and phosphoserine aminotransferase.

Kam Y. J. Zhang, Ashutosh Kumar, T. Nozaki, 2012, Biochimie.

EC359: A First-in-Class Small-Molecule Inhibitor for Targeting Oncogenic LIFR Signaling in Triple-Negative Breast Cancer

Kam Y. J. Zhang, A. Brenner, G. Raj, 2019, Molecular Cancer Therapeutics.

Actin R256 Mono-methylation Is a Conserved Post-translational Modification Involved in Transcription

Kam Y. J. Zhang, Rohit Reja, D. Milewicz, 2020, Cell reports.

Evolutionary Signatures Governing the Codon Usage Bias in Coronaviruses and Their Implications for Viruses Infecting Various Bat Species

Kam Y. J. Zhang, V. Uversky, Chandana Tennakoon, 2021, Viruses.

A novel structure-based approach for identification of vertebrate susceptibility to SARS-CoV-2: Implications for future surveillance programmes

Kam Y. J. Zhang, Y. Malik, R. Kaushik, 2022, bioRxiv.

TIRAP-mediated activation of p38 MAPK in inflammatory signaling

Kam Y. J. Zhang, S. Gan, Ashutosh Kumar, 2022, Scientific Reports.

Structure-based virtual screening of highly potent inhibitors of the nematode chitinase CeCht1

Kam Y. J. Zhang, Ashutosh Kumar, Wei Chen, 2021, Journal of enzyme inhibition and medicinal chemistry.

Pivotal role for S-nitrosylation of DNA methyltransferase 3B in epigenetic regulation of tumorigenesis

Kam Y. J. Zhang, S. Lipton, T. Katagiri, 2023, Nature Communications.

Identification and structure–activity relationship of purine derivatives as novel MTH1 inhibitors

Kam Y. J. Zhang, Ashutosh Kumar, H. Osada, 2017, Chemical biology & drug design.

Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.

Kam Y. J. Zhang, T. Schiex, S. Barbe, 2021, Journal of the American Chemical Society.

Human Glutaminyl Cyclase: Structure, Function, Inhibitors and Involvement in Alzheimer's Disease.

Kam Y. J. Zhang, Dileep Vijayan, 2019, Pharmacological research.

A Novel Therapeutic Peptide Blocks SARS-CoV-2 Spike Protein Binding with Host Cell ACE2 Receptor

Kam Y. J. Zhang, Q. Pan, Sreeparna Banerjee, 2021, Drugs in R&D.

A structural homology approach for computational protein design with flexible backbone

Thomas Schiex, Kam Y. J. Zhang, David Simoncini, 2018, Bioinform..

Role of conserved active site tryptophan-101 in functional activity and stability of phosphoserine aminotransferase from an enteric human parasite

Kam Y. J. Zhang, Ashutosh Kumar, T. Nozaki, 2012, Amino Acids.

Bcl-XL Mutations Suppress Cellular Sensitivity to Antimycin A*

Kam Y. J. Zhang, D. Hockenbery, Michael K Manion, 2004, Journal of Biological Chemistry.

A multidimensional computational exploration of congenital myasthenic syndrome causing mutations in human choline acetyltransferase

Kam Y. J. Zhang, K. V. Dileep, Matej Janezic, 2021, Journal of cellular biochemistry.

Identification of small peptides inhibiting the integrase‐LEDGF/p75 interaction through targeting the cellular co‐factor

Kam Y. J. Zhang, A. Voet, M. de Maeyer, 2013, Journal of peptide science : an official publication of the European Peptide Society.

NbX: Machine Learning-Guided Re-Ranking of Nanobody–Antigen Binding Poses

Kam Y. J. Zhang, Ashutosh Kumar, C. Tam, 2021, Pharmaceuticals.

Protein interface pharmacophore mapping tools for small molecule protein: protein interaction inhibitor discovery.

Kam Y. J. Zhang, Jonathan G Heddle, Kam Y J Zhang, 2013, Current topics in medicinal chemistry.

A series of compounds bearing a dipyrido-pyrimidine scaffold acting as novel human and insect pest chitinases inhibitors.

Kam Y. J. Zhang, Ashutosh Kumar, Tian Liu, 2020, Journal of medicinal chemistry.

Identification of Fungal and Bacterial Denitrification Inhibitors Targeting Copper Nitrite Reductase.

Kam Y. J. Zhang, Minoru Yoshida, Akihisa Matsuyama, 2023, Journal of agricultural and food chemistry.

EC330, a small-molecule compound, is a potential novel inhibitor of LIF signaling

Kam Y. J. Zhang, Wenwei Hu, Zhaohui Feng, 2020, Journal of molecular cell biology.

Identification of Novel Cathepsin B Inhibitors with Implications in Alzheimer’s Disease: Computational Refining and Biochemical Evaluation

Kam Y. J. Zhang, Nitin Chitranshi, Veer Bala Gupta, 2021, Cells.

Computational design of symmetrical eight-bladed β-propeller proteins

Thomas Schiex, Hiroki Noguchi, Kam Y. J. Zhang, 2019, IUCrJ.

Targeting Ras-binding domain of ELMO1 by computational nanobody design

Kam Y. J. Zhang, M. Shirouzu, K. Ihara, 2023, Communications Biology.

Balancing exploration and exploitation in population‐based sampling improves fragment‐based de novo protein structure prediction

Thomas Schiex, Kam Y. J. Zhang, David Simoncini, 2017, Proteins.

The symmetric designer protein Pizza as a scaffold for metal coordination

Kam Y. J. Zhang, J. Tame, A. Voet, 2021, Proteins.

Evolution-Inspired Computational Design of Symmetric Proteins.

Kam Y. J. Zhang, David Simoncini, Kam Y J Zhang, 2017, Methods in molecular biology.

Identification of new SUMO activating enzyme 1 inhibitors using virtual screening and scaffold hopping.

Minoru Yoshida, Kam Y. J. Zhang, Ashutosh Kumar, 2016, Bioorganic & medicinal chemistry letters.

Characterization of pH-induced transitions of Entamoeba histolytica D-phosphoglycerate dehydrogenase.

Kam Y. J. Zhang, Ashutosh Kumar, T. Nozaki, 2015, International journal of biological macromolecules.

Conversion of monomeric protein L to an obligate dimer by computational protein design

Kam Y. J. Zhang, D Baker, David E. Kim, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Dorzolamide suppresses PKCδ -TIRAP-p38 MAPK signaling axis to dampen the inflammatory response.

Kam Y. J. Zhang, V. Gaponenko, H. Jha, 2023, Future medicinal chemistry.

A novel consensus-based computational pipeline for rapid screening of antibody therapeutics for efficacy against SARS-CoV-2 variants of concern including omicron variant

Kam Y. J. Zhang, V. Uversky, R. Kaushik, 2022, bioRxiv.

In-Silico Design of a Novel Tridecapeptide Targeting Spike Protein of SARS-CoV-2 Variants of Concern

Kam Y. J. Zhang, S. Pullamsetti, R. Savai, 2021, International Journal of Peptide Research and Therapeutics.

Fragger: a protein fragment picker for structural queries

Kam Y. J. Zhang, Francois Berenger, Rojan Shrestha, 2017, F1000Research.

Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing.

Kam Y. J. Zhang, Rojan Shrestha, David Simoncini, 2012, Acta crystallographica. Section D, Biological crystallography.

Accelerating ab initio phasing with de novo models.

Kam Y. J. Zhang, Francois Berenger, Rojan Shrestha, 2011, Acta crystallographica. Section D, Biological crystallography.

Comprehensive Intrinsic Disorder Analysis of 6108 Viral Proteomes: From the Extent of Intrinsic Disorder Penetrance to Functional Annotation of Disordered Viral Proteins.

Kam Y. J. Zhang, V. Uversky, S. Longhi, 2021, Journal of proteome research.

FPredX: Interpretable models for the prediction of spectral maxima, brightness, and oligomeric states of fluorescent proteins

Kam Y. J. Zhang, C. Tam, 2021, Proteins.

Bayesian Molecular Dating Analyses Combined with Mutational Profiling Suggest an Independent Origin and Evolution of SARS-CoV-2 Omicron BA.1 and BA.2 Sub-Lineages

Ashutosh Kumar Singh, Kam Y. J. Zhang, V. Uversky, 2022, Viruses.

Assay methods for small ubiquitin-like modifier (SUMO)-SUMO-interacting motif (SIM) interactions in vivo and in vitro using a split-luciferase complementation system.

Kam Y. J. Zhang, A. Voet, Minoru Yoshida, 2014, Analytical Biochemistry.

Assay methods for SUMO–SIM interactions in vivo and in vitro using a split-luciferase complementation system

Kam Y. J. Zhang, A. Voet, Minoru Yoshida, 2013 .

Crystal structure of the computationally designed Tako8 protein in C2

Kam Y. J. Zhang, T. Schiex, J. Tame, 2018 .

Identification of a novel noncatalytic bicarbonate binding site in eubacterial beta-carbonic anhydrase.

Kam Y. J. Zhang, C. Tu, Peter C. Gareiss, 2006, Biochemistry.

Impaired tissue homing by the Ikzf3N159S variant is mediated by interfering with Ikaros function

Kam Y. J. Zhang, I. Taniuchi, A. Padhi, 2023, Frontiers in immunology.

Seven amino acid types suffice to reconstruct the core fold of RNA polymerase

Kam Y. J. Zhang, T. Schiex, S. Barbe, 2021, bioRxiv.

Fragger: a protein fragment picker for structural queries

Kam Y. J. Zhang, F. Berenger, Rojan Shrestha, 2017, F1000Research.

Correction: A Probabilistic Fragment-Based Protein Structure Prediction Algorithm

Kam Y. J. Zhang, F. Berenger, Rojan Shrestha, 2012, PLoS ONE.

Role of conserved active site tryptophan-101 in functional activity and stability of phosphoserine aminotransferase from an enteric human parasite

Kam Y. J. Zhang, Ashutosh Kumar, T. Nozaki, 2011, Amino Acids.

Scaffold-Based Drug Discovery

Kam Y. J. Zhang, M. Milburn, D. Artis, 2007 .

High Throughput Designing and Mutational Mapping of RBD-ACE2 Interface Guide Non-Conventional Therapeutic Strategies for COVID-19

Kam Y. J. Zhang, P. Kalita, A. Padhi, 2020, bioRxiv.