Hideo Matsuda

发表

Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets

Yoshiaki Sota, Shigeto Seno, Yoichi Takenaka, 2016, 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE).

Inference of gene regulatory network based on module network model with gene functional classifications

Yoichi Takenaka, Hideo Matsuda, Kohei Taki, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Tissue-specific functions based on information content of gene ontology using cap analysis gene expression

Yoichi Takenaka, Hideo Matsuda, Atsuko Matsumoto, 2007, Medical & Biological Engineering & Computing.

Implementing Parallel Prolog System on Multiprocessor System PARK

Hideo Matsuda, M. Kohata, T. Masuo, 1987, IWDM.

Tracking and Analysis of FUCCI-Labeled Cells Based on Particle Filters and Time-to-Event Analysis

Shigeto Seno, Hideo Matsuda, Kenji Fujimoto, 2020 .

Retrieving functionally similar bioinformatics workflows using TF-IDF filtering

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2007 .

A method for exploring Tissue-Specific Functions based on Information Content of Gene Ontology Terms using CAGE tags

Yoichi Takenaka, Hideo Matsuda, Atsuko Matsumoto, 2007 .

Evaluating Programmed Artificial Insemination for Cattle Production

Hideo Matsuda, Yunan He, Osamu Fukuda, 2019 .

Implementing an integrated system for heterogeneous molecular biology databases with intelligent agents

Hideo Matsuda, T. Imai, T. Sekihara, 1997, 1997 IEEE Pacific Rim Conference on Communications, Computers and Signal Processing, PACRIM. 10 Years Networking the Pacific Rim, 1987-1997.

An application of an OR-Parallel Prolog system to phylogenetic analysis

Hideo Matsuda, Yukio Kaneda, 1994, LISP Symb. Comput..

Gene Classification Method Based on Batch-Learning SOM

Hideo Matsuda, Takashi Abe, Yoshihiro Kudo, 1999 .

Overview of the JUMP-1, an MPP prototype for general-purpose parallel computations

Hiroshi Nakashima, Hideharu Amano, Hideo Matsuda, 1994, Proceedings of the International Symposium on Parallel Architectures, Algorithms and Networks (ISPAN).

Sequential Prolog machine PEK

Hideo Matsuda, Naoyuki Tamura, Yukio Kaneda, 2009, New Generation Computing.

Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2015, J. Bioinform. Comput. Biol..

Application to Gene Cluster Analysis of Inductive Inference of Languages over Patterns with Conceptual Hierarchy

Hideo Matsuda, Akihiro Hashimoto, Yukako Tohsato, 1999 .

A Method for Extracting Molecular Phylogenetic Tree Data from Document Images and Its Performance Evaluation

Hideo Matsuda, Hiromasa Hironaka, Tomohiro Tabe, 1999 .

A tool for learning logic circuits

Yoshio Nakashima, Mamoru Takamatsu, Hideo Matsuda, 2001 .

A Search Method for Similar Compounds in Very Large Compound Database

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2008 .

Analyzing Leukocyte Migration Trajectories by Deformable Image Matching

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2019, 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE).

On the implementation of a phylogenetic tree database

Hideo Matsuda, Akihiro Hashimoto, Tatsuya Yoshikawa, 1999, 1999 IEEE Pacific Rim Conference on Communications, Computers and Signal Processing (PACRIM 1999). Conference Proceedings (Cat. No.99CH36368).

An efficient procedure for maintaining materialized views on distributed database systems

Hideo Matsuda, Michio Nakanishi, Takeya Kasukawa, 2000 .

Efficient Query Processing on Genomic Database using Data-Parallel Logic Programming Language

Hideo Matsuda, H. Matsuda, 1993 .

Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery

Shinji Shimojo, Susumu Date, Hideo Matsuda, 2005 .

A FRAMEWORK FOR BIOLOGICAL ANALYSIS ON THE GRID

Susumu Date, Yoichi Takenaka, Hideo Matsuda, 2006 .

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2001, Nucleic Acids Res..

Using Data Compression for Multidimensional Distribution Analysis

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2002, IEEE Intell. Syst..

A graph analysis method to detect metabolic sub-networks based on phylogenetic profile

Yoichi Takenaka, Hideo Matsuda, Shoko Miyake, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

A Combination Method of the Tanimoto Coefficient and Proximity Measure of Random Forest for Compound Activity Prediction

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2008 .

Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis

Shigeto Seno, Hideo Matsuda, Wataru Hirota, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process

Shinji Shimojo, Susumu Date, Hideo Matsuda, 2004, LSGRID.

The Remote Measurement and Construction Management System for SASHIKI Bridge

Hideo Matsuda, Takatoshi Okabayashi, Toru Yoshimura, 2000 .

A challenge towards next-generation research infrastructure for advanced life science

Haruki Nakamura, Shinji Shimojo, Susumu Date, 2009, New Generation Computing.

An Adaptable Method to Changes in Situation for Generating Motion Data for Use in Standing-up by FES

Tomozumi Ikeda, Hideo Matsuda, Takeshi Kataoka, 2004 .

High Performance I/O System of the Distributed Shared-Memory Massively Parallel Computer JUMP-1

Hideo Matsuda, Takashi Matsumoto, Kei Hiraki, 1995, Parallel and Distributed Computing and Systems.

FREP: a database of functional repeats in mouse cDNAs

Akihiko Konagaya, Hideo Matsuda, Nikolai Petrovsky, 2004, Nucleic Acids Res..

A Grid-based Information Integration System for Drug Discovery

Shinji Shimojo, Susumu Date, Hideo Matsuda, 2005, 21st International Conference on Data Engineering Workshops (ICDEW'05).

Hierarchical Approach to Parallel Tree Search for Protein Conformational Analysis

Hideo Matsuda, Makoto Ando, Yutaka Akiyama, 2000, PDPTA.

Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering

Yoshiaki Sota, Shigeto Seno, Shinzaburo Noguchi, 2018, 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE).

Graph-based clustering for finding distant relationships in a large set of protein sequences

Yoichi Takenaka, Hideo Matsuda, Hideya Kawaji, 2004, Bioinform..

Fast phylogenetic analysis on a massively parallel machine

Hideo Matsuda, Ross A. Overbeek, Yukio Kaneda, 1994, ICS '94.

Color image forming apparatus having a buffer memory for storing the rotary type farbkonvertierter amounts of image information

Hideo Matsuda, Akira Tamagaki, Yoichi Shimazawa, 1998 .

Representing Functional Annotations of Mouse cDNA Sequences in XML

Hideo Matsuda, Yoshihide Hayashizaki, Hidemasa Bono, 2000 .

A method for efficient execution of bioinformatics workflows.

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2009, Genome informatics. International Conference on Genome Informatics.

A Method for Querying Complete Genomes by Viewing Them as Structured Documents

Hideo Matsuda, Akihiro Hashimoto, Aaron J. Stokes, 1998 .

Querying Molecular Biology Databases by Integration Using Multiagents

Hideo Matsuda, 1999 .

An algorithm generating multi-level NAND logic circuits

Hideo Matsuda, Takashi Miyagoshi, 2001 .

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

Hideo Matsuda, Ross A. Overbeek, Gary J. Olsen, 1994, Comput. Appl. Biosci..

An application for learning logic circuits

Yoshio Nakashima, Hideo Matsuda, Takashi Miyagoshi, 2001 .

Adapting the biological prior knowledge to the gene regulation network inference using Module Bayesian Network

Yoichi Takenaka, Hideo Matsuda, Kohei Taki, 2003 .

Using Data Compression for Multidimensional Analysis

Hideo Matsuda, Tamotsu Noguchi, Yutaka Akiyama, 2002 .

Architecture of a grid-enabled research platform with location-transparency for bioinformatics.

Hideo Matsuda, Shinji Shimojo, Juncai Ma, 2004, Genome informatics. International Conference on Genome Informatics.

A clustering method for comparative analysis between genomes and pathways

Yoichi Takenaka, Hideo Matsuda, Yukako Tohsato, 2003, Eighth International Conference on Database Systems for Advanced Applications, 2003. (DASFAA 2003). Proceedings..

A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2014, 2014 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images.

A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2014, 2014 1st Workshop on Pattern Recognition Techniques for Indirect Immunofluorescence Images.

"Deterministic Diffusion" in a Neural Network Model (Special Section of Letters Selected from the 1994 IEICE Spring Conference)

Hideo Matsuda, Akihiko Uchiyama, 1994 .

A highly reliable press packed IGBT

Hideo Matsuda, Noriyasu Kawamura, Michiaki Hiyoshi, 2000 .

Implementation of a Parallel Prolog System on a Distributed Memory Parallel Computer (Special Issue on Parallel and Distributed Supercomputing)

Hideo Matsuda, Yukio Kaneda, Toru Kawabata, 1997 .

MaXML: mouse annotation XML

Hideo Matsuda, Yoshihide Hayashizaki, Hidemasa Bono, 2003, Silico Biol..

P-quasi complete linkage analysis for gene-expression data

Shigeto Seno, Hideo Matsuda, Reiji Teramoto, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

An application of a pathway alignment method to comparative analysis between genome and pathways

Hideo Matsuda, Yukako Tohsato, Shoko Miyake, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

A Distributed-Processing System for Accelerating Biological Research Using Data-Staging

Susumu Date, Shigeto Seno, Yoichi Takenaka, 2008 .

GXML: A Novel Method for Exchanging and Querying Complete Genomes by Representing them as Structured Documents

Hideo Matsuda, Akihiro Hashimoto, H. Matsuda, 1999 .

A new method for maintaining semi-structured data described in XML

Hideo Matsuda, M. Nakanishi, Akihiro Hashimoto, 1999, 1999 IEEE Pacific Rim Conference on Communications, Computers and Signal Processing (PACRIM 1999). Conference Proceedings (Cat. No.99CH36368).

A tool for learning basic logic circuits

Hideo Matsuda, Takashi Miyagoshi, 2001 .

Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads

Yoshiaki Sota, Shigeto Seno, Hideo Matsuda, 2019, J. Bioinform. Comput. Biol..

A bone marrow cavity segmentation method using wavelet-based texture feature

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2016, 2016 23rd International Conference on Pattern Recognition (ICPR).

Inference of TFRNs (2).

Hideo Matsuda, 2014, Methods in molecular biology.

A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy

Hideo Matsuda, Akihiro Hashimoto, Yukako Tohsato, 2000, ISMB.

Computer Algorithm for Minimal Cover Problems by Representation of Prime Implicant with Prime Number

Hideo Matsuda, Kuniyuki Honjo, Takashi Miyagoshi, 1979 .

Designing a Rule-Based Environment to Interoperate Life-Scientific Ontologies for Drug Discovery

Shinji Shimojo, Susumu Date, Hideo Matsuda, 2005, 2005 Symposium on Applications and the Internet Workshops (SAINT 2005 Workshops).

A method to derive the disjoint disjunctive form of logical expressions (abstract)

Hideo Matsuda, Takashi Miyagoshi, 1992 .

Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A Priority Control System for OR-Parallel Prolog and Its Performance Evaluation

Hideo Matsuda, Yukio Kaneda, Shigeo Suzuka, 1992, Parallel Symbolic Computing.

Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2017, J. Bioinform. Comput. Biol..

Implementation of a parallel processing system for inference of phylogenetic trees

Hideo Matsuda, Yukio Kaneda, R. Overbeek, 1993, Proceedings of IEEE Pacific Rim Conference on Communications Computers and Signal Processing.

A fedaration method for molecular biology databases using data grid thchnology

Shinji Shimojo, Susumu Date, Hideo Matsuda, 2003 .

SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorization

Shigeto Seno, Hideo Matsuda, Makoto Onizuka, 2020, bioRxiv.

An efficient procedure for maintaining materialized views on distributed database systems

Hideo Matsuda, Akihiro Hashimoto, Michio Nakanishi, 2000, Systems and Computers in Japan.

Single-cell Transcriptome Analysis of Mouse Leukocytes in Inflammatory Stimulation

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Classifying Molecular Sequences Using a Linkage Graph With Their Pairwise Similarities

Hideo Matsuda, Akihiro Hashimoto, T. Ishihara, 1999, Theor. Comput. Sci..

Querying genomic database by using a parallel logic programming system on distributed computing environment

Hideo Matsuda, H. Matsuda, 1995, IEEE Pacific Rim Conference on Communications, Computers, and Signal Processing. Proceedings.

Development of security camera with privacy protection and, social experiment using the security camera with privacy protection

Hiroshi Ueda, Hideo Matsuda, Naoya Ohta, 2016 .

A Study on Distributed Simulation for Flexible Manufacturing Systems

Hideo Matsuda, Susumu Fujii, M. Tasaka, 1990 .

Gendoo: Functional profiling of gene and disease features using MeSH vocabulary

Hideo Matsuda, Toshihisa Takagi, Takeru Nakazato, 2009, Nucleic Acids Res..

Quick selection of representative protein chain sets based on customizable requirements

Hideo Matsuda, Makoto Ando, Tamotsu Noguchi, 2000, Bioinform..

Parallel Prolog Machine PARK: Its Hardware Structure and Prolog System

Hideo Matsuda, M. Kohata, T. Masuo, 1985, LP.

A Grid Environment for Data Integration of Scientific Databases

Hideo Matsuda, 2005, e-Science.

Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2018, BMC Bioinformatics.

Introduction of Aggregate Functions to a Language for Querying Structured Genome Documents (夏のデータベースワークショップ1999(DBWS'99)沖縄--1999年7の月,天から大量データが降ってくる!) -- (4C:半構造データ検索(2))

Hideo Matsuda, Akihiro Hashimoto, Aaron J. Stokes, 1999 .

BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes

Hideo Matsuda, Hironori Mizuguchi, Takeru Nakazato, 2008, Silico Biol..

A CNN-based cell tracking method for multi-slice intravital imaging data

Masaru Ishii, Shigeto Seno, Hideo Matsuda, 2021, BCB.

A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts

Hideo Matsuda, Haruo Takemura, Yoshihiro Kuroda, 2014 .

A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue

Masaru Ishii, Hideo Matsuda, Haruo Takemura, 2014 .

A method for clustering gene expression data based on graph structure.

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2004, Genome informatics. International Conference on Genome Informatics.

Perfect Hamming code with a hash table for faster genome mapping

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2011, BMC Genomics.

Development and evaluation of an automated annotation pipeline and cDNA annotation system.

Hideo Matsuda, John Quackenbush, Yoshihide Hayashizaki, 2003, Genome research.

Construction of Phylogenetic Trees from Amino Acid Sequences using a Genetic Algorithm

Hideo Matsuda, H. Matsuda, 1995 .

Inference of S-system models of gene regulatory networks using immune algorithm.

Shigeto Seno, Yoichi Takenaka, Hideo Matsuda, 2011, Journal of bioinformatics and computational biology.

Detection of Conserved Domains in Protein Sequences Using a Maximum-Density Subgraph Alogrithm

Hideo Matsuda, 2000 .

An Integrated Database to Support Research on Escherichia Coli

Hideo Matsuda, Ross Overbeek, Ray Hagstrom, 1992 .