Yanni Sun

发表

Designing seeds for similarity search in genomic DNA

Jeremy Buhler, Uri Keich, Yanni Sun, 2003, RECOMB '03.

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding

Yingchao Zhao, Yanni Sun, Jiao Chen, 2018, bioRxiv.

MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short Sequences

Yuan Zhang, Yanni Sun, Yuan Zhang, 2011, Pacific Symposium on Biocomputing.

Computer Network Simulation Modeling Based on Object Oriented Petri Net

Yanni Sun, Xinhua Chen, 2016, Int. J. Online Eng..

Improve homology search sensitivity of PacBio data by correcting frameshifts

Nan Du, Yanni Sun, Nan Du, 2016, Bioinform..

LncRNA-ID: Long non-coding RNA IDentification using balanced random forests

Yuan Zhang, Rujira Achawanantakun, Yanni Sun, 2015, Bioinform..

PseudoDomain: identification of processed pseudogenes based on protein domain classification

Yuan Zhang, Yanni Sun, Yuan Zhang, 2012, BCB.

A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data

Yuan Zhang, James R. Cole, Yanni Sun, 2014, PLoS Comput. Biol..

Designing Patterns and Profiles for Faster HMM Search

Jeremy Buhler, Yanni Sun, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Ncrna Consensus Secondary Structure Derivation Using Grammar Strings

Rujira Achawanantakun, Yanni Sun, Seyedeh Shohreh Takyar, 2011, J. Bioinform. Comput. Biol..

Reconstructing 16S rRNA genes in metagenomic data

James R. Cole, Cheng Yuan, Jikai Lei, 2015, Bioinform..

Cap-seq reveals complicated miRNA transcriptional mechanisms in C. elegans and mouse

Yanni Sun, Jiao Chen, Dongxiao Zhu, 2017, Quantitative Biology.

NcRNA homology search using Hamming distance seeds

Jikai Lei, Yanni Sun, Alex Liu, 2011, BCB '11.

A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads

Yuan Zhang, James R. Cole, Yanni Sun, 2013, Bioinform..

Shape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVM

Rujira Achawanantakun, Yanni Sun, Yanni Sun, 2013, BMC Bioinformatics.

Choosing the best heuristic for seeded alignment of DNA sequences

Jeremy Buhler, Yanni Sun, J. Buhler, 2006, BMC Bioinformatics.

Designing multiple simultaneous seeds for DNA similarity search

Jeremy Buhler, Yanni Sun, J. Buhler, 2004, J. Comput. Biol..

Designing patterns for profile HMM search

Jeremy Buhler, Yanni Sun, J. Buhler, 2007, Bioinform..

Genome-scale Ncrna Homology Search Using a Hamming Distance-based Filtration Strategy

Jikai Lei, Yanni Sun, Alex Liu, 2022 .

Designing Multiple Simultaneous Seeds for DNA Similarity Search

Jeremy Buhler, Yanni Sun, 2005, J. Comput. Biol..

Application and Realization of Improved Apriori Algorism in Hadoop Simulation Platform for Mass Data Process

Yanni Sun, Xinhua Chen, 2016, Int. J. Online Eng..

Designing Filters for Fast-Known NcRNA Identification

Jeremy Buhler, Cheng Yuan, Yanni Sun, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors

Yuan Zhang, Yanni Sun, Yuan Zhang, 2011, BMC Bioinformatics.

Designing filtration strategies for fast sequence annotation

Yanni Sun, 2008 .

BLAST Tree: Fast Filtering for Genomic Sequence Classification

James R. Cole, Sakti Pramanik, Yanni Sun, 2010, 2010 IEEE International Conference on BioInformatics and BioEngineering.

Assemble CRISPRs from metagenomic sequencing data

Jikai Lei, Yanni Sun, Yanni Sun, 2016, Bioinform..

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

Yanni Sun, Jiao Chen, Jiating Huang, 2019, BMC Bioinformatics.

Designing seeds for similarity search in genomic DNA

Jeremy Buhler, Uri Keich, Yanni Sun, 2005, J. Comput. Syst. Sci..

Efficient known ncRNA search including pseudoknots

Cheng Yuan, Yanni Sun, 2013, BMC Bioinformatics.

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data

Jikai Lei, Yanni Sun, Yanni Sun, 2014, Bioinform..

Ribosomal Database Project: data and tools for high throughput rRNA analysis

James R. Cole, Qiong Wang, Benli Chai, 2013, Nucleic Acids Res..

Bacteriophage classification for assembled contigs using graph convolutional network

Yanni Sun, Jiayu Shang, Jingzhe Jiang, 2021, Bioinform..

Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning

Yanni Sun, Jiayu Shang, Yanni Sun, 2021, BMC Biology.

Detecting the hosts of bacteriophages using GCN-based semi-supervised learning pdf

Yanni Sun, Jiayu Shang, Yanni Sun, 2021, ArXiv.

Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes1[OPEN]

Jikai Lei, Yanni Sun, Mark Yandell, 2014, Plant Physiology.

Grammar string : a novel ncRNA secondary structure representation

Rujira Achawanantakun, Yanni Sun, Seyedeh Shohreh Takyar, 2010 .

Designing Patterns and Profiles for Faster HMM Search

Jeremy Buhler, Yanni Sun, 2009, TCBB.

RNA-CODE: A Noncoding RNA Classification Tool for Short Reads in NGS Data Lacking Reference Genomes

Yanni Sun, Cheng Yuan, Yanni Sun, 2013, PloS one.