Suzanne S. Sindi

Ali Bashir, Benjamin J. Raphael, Suzanne S. Sindi, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

Link-capability driven network planning and operation

Kar-Ming Cheung, Suzanne S. Sindi, C. H. Lee, 2002, Proceedings, IEEE Aerospace Conference.

Mathematical Analysis of the Impact of Social Structure on Ectoparasite Load in Allogrooming Populations

Heather Z. Brooks, Suzanne S. Sindi, Nina H. Fefferman, 2018 .

Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data

Benjamin J. Raphael, Suzanne S. Sindi, S. Sindi, 2009, RECOMB.

Handbook of Computational Molecular Biology: Edited by Srinivas Aluru

Suzanne S. Sindi, 2007, Briefings Bioinform..

A study in nucleated polymerization models of protein aggregation

Suzanne S. Sindi, Jason K. Davis, S. Sindi, 2015, Appl. Math. Lett..

Conservative finite volume method on deforming geometries: The case of protein aggregation in dividing yeast cells

Maxime Theillard, Suzanne S. Sindi, A. Ali Heydari, 2022, J. Comput. Phys..

Assessing the impact of product inhibition in a chromogenic assay.

Suzanne S. Sindi, Michael T. Stobb, S. Sindi, 2019, Analytical biochemistry.

Detecting novel genomic structural variants through negative binomial optimization

Roummel F. Marcia, Suzanne S. Sindi, R. Marcia, 2020, 2020 54th Asilomar Conference on Signals, Systems, and Computers.

Structural Variant Prediction in Extended Pedigrees Through Sparse Negative Binomial Genome Signal Recovery

Roummel F. Marcia, Suzanne S. Sindi, Mario Banuelos, 2018, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Negative Binomial Optimization for Biomedical Structural Variant Signal Reconstruction

Roummel F. Marcia, Suzanne S. Sindi, Mario Banuelos, 2018, 2018 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Constrained variant detection with SPaRC: Sparsity, parental relatedness, and coverage

Roummel F. Marcia, Suzanne S. Sindi, Lasith Adhikari, 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

A dominant-negative mutant inhibits multiple prion variants through a common mechanism

Suzanne S. Sindi, S. Sindi, T. Serio, 2017, PLoS genetics.

CD8 Follicular T Cells Promote B Cell Antibody Class Switch in Autoimmune Disease

Suzanne S. Sindi, Jason K. Davis, Travis J. Lawrence, 2018, The Journal of Immunology.

This information is current as Disease Antibody Class Switch in Autoimmune CD 8 Follicular T Cells Promote B Cell

Suzanne S. Sindi, Jason K. Davis, Travis J. Lawrence, 2018 .

Evidence for Prescribed NK Cell Ly-49 Developmental Pathways in Mice

Suzanne S. Sindi, S. Sindi, Alberto J. Millan, 2020, The Journal of Immunology.

Multi-Scale Mathematical Modeling of Prion Aggregate Dynamics and Phenotypes in Yeast Colonies

Suzanne S. Sindi, S. Sindi, Mikahl Banwarth-Kuhn, 2019, Apolipoproteins, Triglycerides and Cholesterol.

Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model

Suzanne S. Sindi, H. Banks, S. Sindi, 2018 .

A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation

Suzanne S. Sindi, Jason K. Davis, S. Sindi, 2015, Journal of Mathematical Biology.

Mathematical Modeling of Prion Disease

Suzanne S. Sindi, S. Sindi, 2017 .

Mathematical Modeling of Prion Disease Mathematical Modeling of Prion Disease

Suzanne S. Sindi, S. Sindi, 2017 .

Nucleation seed size determines amyloid clearance and establishes a barrier to prion appearance in yeast

Suzanne S. Sindi, S. Sindi, J. Villali, 2020, Nature Structural & Molecular Biology.

How and why to build a mathematical model: A case study using prion aggregation

Suzanne S. Sindi, S. Sindi, Mikahl Banwarth-Kuhn, 2020, The Journal of Biological Chemistry.

A Size Threshold Limits Prion Transmission and Establishes Phenotypic Diversity

Suzanne S. Sindi, S. Sindi, Aaron Derdowski, 2010, Science.

AddTag, a two-step approach with supporting software package that facilitates CRISPR/Cas-mediated precision genome editing

Suzanne S. Sindi, S. Sindi, Thaddeus D Seher, 2021, G3.

Characterization of Phage Fitness through Single-Phage Assays

Suzanne S. Sindi, D. Weinreich, Jeffrey Yuan, 2012 .

Going through phages: a computational approach to revealing the role of prophage in Staphylococcus aureus

Suzanne S. Sindi, Mark J. Sistrom, S. Sindi, 2021, bioRxiv.

Efficient n-gram analysis in R with cmscu

Rick Dale, David W. Vinson, Suzanne S. Sindi, 2016, Behavior Research Methods.

Efficient n-gram analysis in R with cmscu

David W. Vinson, Suzanne S. Sindi, Jason K. Davis, 2016, Behavior Research Methods.

Deep Learning in Spatial Transcriptomics: Learning From the Next Next-Generation Sequencing

Suzanne S. Sindi, S. Sindi, A. Heydari, 2022, bioRxiv.

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

Suzanne S. Sindi, S. Sindi, F. Santiago, 2022, PLoS Comput. Biol..

How Disease Risks Can Impact the Evolution of Social Behaviors and Emergent Population Organization

Heather Z. Brooks, Suzanne S. Sindi, Maryann E. Hohn, 2018 .

Duplication count distributions in DNA sequences.

Suzanne S. Sindi, J. Yorke, B. Hunt, 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

Quantifying the Biophysical Impact of Budding Cell Division on the Spatial Organization of Growing Yeast Colonies

Suzanne S. Sindi, S. Sindi, Mikahl Banwarth-Kuhn, 2020, Applied Sciences.

A Computational Workflow for Analysis of 3′ Tag‐Seq Data

Suzanne S. Sindi, S. Sindi, C. Nobile, 2023, Current protocols.

Rules of Engagement: A Guide to Developing Agent-Based Models.

Suzanne S. Sindi, M. Griesemer, 2021, Methods in molecular biology.

A Discrete-Time Branching Process Model of Yeast Prion Curing Curves*

Suzanne S. Sindi, P. Olofsson, 2013, Mathematical population studies.

Prion dynamics and the quest for the genetic determinant in protein-only inheritance.

Suzanne S. Sindi, S. Sindi, T. Serio, 2009, Current opinion in microbiology.

Describing and Modeling Repetitive Sequences in Dna Describing and Modeling Repeated Sequences in Dna I Have Also Benefited Tremendously from Discussions about My Research With

Suzanne S. Sindi, S. Sindi, 2006 .

Distinct Prion Domain Sequences Ensure Efficient Amyloid Propagation by Promoting Chaperone Binding or Processing In Vivo

Suzanne S. Sindi, S. Sindi, T. Serio, 2016, PLoS genetics.

Low normal factor V enhances thrombin generation in hemophilia A by a substrate competition mechanism with factor Xa

Suzanne S. Sindi, A. Fogelson, S. Sindi, 2022, bioRxiv.

To isolate or not to isolate: the impact of changing behavior on COVID-19 transmission

Suzanne S. Sindi, Igor V. Erovenko, S. Sindi, 2020, BMC Public Health.

Ensemble-based topological entropy calculation (E-tec).

Suzanne S. Sindi, Spencer A. Smith, K. Mitchell, 2018, Chaos.

Modeling transposable element dynamics with fragmentation equations.

Suzanne S. Sindi, S. Sindi, Mario Banuelos, 2018, Mathematical biosciences.

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors

Suzanne S. Sindi, R. Albert, S. Sindi, 2023, bioRxiv.

Host tracheal and intestinal microbiomes inhibit Coccidioides growth in vitro

Suzanne S. Sindi, G. Loots, D. Weilhammer, 2023, bioRxiv.

The Art and Science of Building a Computational Model to Understand Hemostasis

Suzanne S. Sindi, A. Fogelson, S. Sindi, 2021, Seminars in Thrombosis and Hemostasis.

Integrated platform for manual and high‐throughput statistical validation of tandem mass spectra

Kebing Yu, Suzanne S. Sindi, Suzanne Sindi, 2009, Proteomics.

Nonconvex regularization for sparse genomic variant signal detection

Roummel F. Marcia, Lasith Adhikari, Suzanne S. Sindi, 2017, 2017 IEEE International Symposium on Medical Measurements and Applications (MeMeA).

An integrative probabilistic model for identification of structural variation in sequencing data

Benjamin J. Raphael, Suzanne S. Sindi, Hsin-Ta Wu, 2012, Genome Biology.

Growth rate assays reveal fitness consequences of β-lactamases

Suzanne S. Sindi, J. Meza, M. Barlow, 2020, PloS one.

Culturomics as a data playground for tests of selection: Mathematical approaches to detecting selection in word use.

Rick Dale, Suzanne S. Sindi, Suzanne S Sindi, 2016, Journal of theoretical biology.

ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders

Suzanne S. Sindi, S. Sindi, K. Hoyer, 2021, bioRxiv.

Adaptive Processes Change as Multiple Functions Evolve

Suzanne S. Sindi, Bjørn Østman, S. Sindi, 2021, Antimicrobial Agents and Chemotherapy.

Finding the boundary between evolutionary basins of attraction, and implications for Wright’s fitness landscape analogy

Suzanne S. Sindi, R. Watson, D. Weinreich, 2013 .

Boosting Single-Cell RNA Sequencing Analysis with Simple Neural Attention

Suzanne S. Sindi, E. Fertig, S. Sindi, 2023, bioRxiv.

N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification

Suzanne S. Sindi, S. Sindi, K. Hoyer, 2022, bioRxiv.

Topological chaos in a three-dimensional spherical fluid vortex

Suzanne S. Sindi, Spencer A. Smith, K. Mitchell, 2016, 1703.05374.