Sayed-Amir Marashi

发表

Impact of residue accessible surface area on the prediction of protein secondary structures

Hamid Pezeshk, Mehdi Sadeghi, Amir Momen-Roknabadi, 2008, BMC Bioinformatics.

Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks

Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, 2006, Comput. Biol. Chem..

CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density

Saeed Jalili, Sayed-Amir Marashi, Amir lakizadeh, 2015, Comput. Biol. Chem..

Constraint-based Analysis of Substructures of Metabolic Networks

Sayed-Amir Marashi, S. Marashi, 2011 .

FCDECOMP: Decomposition of metabolic networks based on flux coupling relations

Changiz Eslahchi, Sayed-Amir Marashi, Abolfazl Rezvan, 2014, J. Bioinform. Comput. Biol..

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks

Alexander Bockmayr, Sayed-Amir Marashi, Abdelhalim Larhlimi, 2011, BMC Bioinformatics.

Biomedical applications of cell- and tissue-specific metabolic network models

Sayed-Amir Marashi, Hamideh Fouladiha, H. Fouladiha, 2017, J. Biomed. Informatics.

Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks

Rahim Jafari, Mehdi Ahmadi, Sayed-Amir Marashi, 2015, Comput. Biol. Medicine.

Analysis of Metabolic Subnetworks by Flux Cone Projection

Alexander Bockmayr, Sayed-Amir Marashi, László Dávid, 2011, Algorithms for Molecular Biology.

Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach

Babak Teimourpour, Majid Rahimi, Sayed-Amir Marashi, 2019, Comput. Biol. Medicine.

A graph-based approach to analyze flux-balanced pathways in metabolic networks

Morteza Saheb Zamani, Mehdi Sedighi, Mona Arabzadeh, 2018, Biosyst..

Finding elementary flux modes in metabolic networks based on flux balance analysis and flux coupling analysis: application to the analysis of Escherichia coli metabolism

Sayed-Amir Marashi, Shayan Tabe-Bordbar, 2013, Biotechnology Letters.

Flux coupling analysis of metabolic networks is sensitive to missing reactions

Alexander Bockmayr, Sayed-Amir Marashi, A. Bockmayr, 2011, Biosyst..

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins

Changiz Eslahchi, Mehdi Kargar, Hamid Pezeshk, 2008, BMC Bioinformatics.

Impact of RNA structure on the prediction of donor and acceptor splice sites

Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, 2006, BMC Bioinformatics.

Sayed-Amir Marashi, Zhaleh Hosseini, S. Marashi, 2015, J. Bioinform. Comput. Biol..

The necessity of extraction of ligand binding data from literature

Sayed-Amir Marashi, 2005 .

SAFEPPP: a Simple And Fast method to Find and analyze Extreme Points of a metabolic Phenotypic Phase Plane

Sayed-Amir Marashi, Mohammad Hossein Moteallehi-Ardakani, S. Marashi, 2019, bioRxiv.

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data.

Mostafa Rezaei-Tavirani, Mehdi Sadeghi, Sayed-Amir Marashi, 2013, Biochimica et biophysica acta.

Reconstruction of a generic metabolic network model of cancer cells.

Sayed-Amir Marashi, S. Marashi, Mahdieh Hadi, 2014, Molecular bioSystems.

Genome-scale reconstruction of the metabolic network in Pseudomonas stutzeri A1501.

Sayed-Amir Marashi, Parizad Babaei, S. Marashi, 2015, Molecular bioSystems.

A multiscale agent-based framework integrated with a constraint-based metabolic network model of cancer for simulating avascular tumor growth.

Sayed-Amir Marashi, Mehrdad Ghadiri, Mahshid Heidari, 2017, Molecular bioSystems.

Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks.

Mostafa Rezaei-Tavirani, Mehdi Sadeghi, Sayed-Amir Marashi, 2013, Mitochondrion.

Modeling the Differences in Biochemical Capabilities of Pseudomonas Species by Flux Balance Analysis: How Good Are Genome-Scale Metabolic Networks at Predicting the Differences?

Sayed-Amir Marashi, Parizad Babaei, Tahereh Ghasemi-Kahrizsangi, 2014, TheScientificWorldJournal.

A kidney-specific genome-scale metabolic network model for analyzing focal segmental glomerulosclerosis

Salma Sohrabi-Jahromi, Sayed-Amir Marashi, Shiva Kalantari, 2016, Mammalian Genome.

β-Sheet capping: Signals that initiate and terminate β-sheet formation

Hamid Pezeshk, Sayed-Amir Marashi, Fahim Farzadfard, 2008 .

Beta-sheet capping: signals that initiate and terminate beta-sheet formation.

Hamid Pezeshk, Sayed-Amir Marashi, Fahim Farzadfard, 2008, Journal of structural biology.

ADDITION OF CONTACT NUMBER INFORMATION CAN IMPROVE PROTEIN SECONDARY STRUCTURE PREDICTION BY NEURAL NETWORKS

Sayed-Amir Marashi, Amir Lakizadeh, A. Lakizadeh, 2009 .

Studying the Relationship between Robustness against Mutations in Metabolic Networks and Lifestyle of Organisms

Sayed-Amir Marashi, S. Marashi, M. Mahdavi, 2013, TheScientificWorldJournal.

PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data.

Saeed Jalili, Sayed-Amir Marashi, Amir Lakizadeh, 2015, Journal of theoretical biology.

A sperm-specific proteome-scale metabolic network model identifies non-glycolytic genes for energy deficiency in asthenozoospermia

Sayed-Amir Marashi, S. Marashi, N. Ansari-Pour, 2017, Systems biology in reproductive medicine.

Adaptation of proteins to different environments: a comparison of proteome structural properties in Bacillus subtilis and Escherichia coli.

Hamid Pezeshk, Sayed-Amir Marashi, H. Pezeshk, 2007, Journal of theoretical biology.