Dimitrios Vlachakis

发表

State-of-the-Art GPGPU Applications in Bioinformatics

Vasileios Megalooikonomou, Sophia Kossida, Nikitas Papangelopoulos, 2013 .

Space Constrained Homology Modelling: The Paradigm of the RNA-Dependent RNA Polymerase of Dengue (Type II) Virus

Sophia Kossida, Dimitrios Vlachakis, Dimitrios-Georgios Kontopoulos, 2013, Comput. Math. Methods Medicine.

Automatic single- and multi-label enzymatic function prediction by machine learning

Nikos Paragios, Dimitrios Vlachakis, Shervine Amidi, 2017, PeerJ.

Antibody Clustering Using a Machine Learning Pipeline that Fuses Genetic, Structural, and Physicochemical Properties.

Dimitrios Vlachakis, Louis Papageorgiou, Dimitris Maroulis, 2020, Advances in experimental medicine and biology.

DrugOn: a fully integrated pharmacophore modeling and structure optimization toolkit

Christos Makris, Vasileios Megalooikonomou, Sophia Kossida, 2015, PeerJ.

Gromita: A Fully Integrated Graphical User Interface to Gromacs 4

Dimitrios Vlachakis, Metaxia Vlassi, Diamantis Sellis, 2009, Bioinformatics and biology insights.

Advanced Protein Alignments Based on Sequence, Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme

Sophia Kossida, Dimitrios Vlachakis, Alexandros Armaos, 2017, Mathematics in Computer Science.

A genomic data mining pipeline for 15 species of the genus Olea.

Vasileios Megalooikonomou, Dimitrios Vlachakis, Constantinos Salis, 2019, EMBnet.journal.

State-of-the-Art Neural Networks Applications in Biology

George K. Matsopoulos, Sophia Kossida, Nikitas Papangelopoulos, 2013 .

Drugena: A Fully Automated Immunoinformatics Platform for the Design of Antibody-Drug Conjugates Against Neurodegenerative Diseases.

Dimitrios Vlachakis, Louis Papageorgiou, Dimitris Maroulis, 2020, Advances in experimental medicine and biology.

EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation

Nikos Paragios, Evangelia I. Zacharaki, Vasileios Megalooikonomou, 2017, PeerJ.

Introductory Chapter: Molecular Docking - Overview, Background, Application and What the Future Holds

Dimitrios Vlachakis, D. Vlachakis, 2018, Molecular Docking.

Antibody Drug Conjugate Bioinformatics: Drug Delivery through the Letterbox

Sophia Kossida, Dimitrios Vlachakis, D. Vlachakis, 2013, Comput. Math. Methods Medicine.

Molecular Modelling Study of the 3D Structure of the Bovine Viral Diarrhea Virus (BVDV) Helicase

Dimitrios Vlachakis, Andrea Brancale, Chrisanthy Vlachaki, 2008, Silico Biol..

ASSP; the Antibody Secondary Structure Profile search tool

Sophia Kossida, Dimitrios Vlachakis, Arianna Filntisi, 2014, ICABD.

A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors

Nikos Paragios, Evangelia I. Zacharaki, Dimitrios Vlachakis, 2016, IWBBIO.

State-of-the-art technology in modern computer-aided drug design

Sophia Kossida, Georgios A. Dalkas, Dimitrios Vlachakis, 2013, Briefings Bioinform..

Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit

Vasileios Megalooikonomou, Sophia Kossida, Dimitrios Vlachakis, 2013, Bioinform..

Applied bioinformatics in the structural, post-genomic era

Sophia Kossida, Dimitrios Vlachakis, Georgia Tsiliki, 2013 .

Genomic big data hitting the storage bottleneck

Vasileios Megalooikonomou, Dimitrios Vlachakis, Louis Papageorgiou, 2018, EMBnet.journal.

On integrating multi-experiment microarray data

Georgia Tsiliki, Sophia Kossida, Dimitrios Vlachakis, 2014, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

Molecular dynamics simulations through GPU video games technologies.

Eleftheria Polychronidou, Vasileios Megalooikonomou, Sophia Kossida, 2014, Journal of molecular biochemistry.

Protein signatures using electrostatic molecular surfaces in harmonic space

Vasileios Megalooikonomou, Georgia Tsiliki, Sophia Kossida, 2013, PeerJ.

Introducing Thetis: a comprehensive suite for event detection in molecular dynamics.

Vasileios Megalooikonomou, Dimitrios Vlachakis, Eleni Picasi, 2018, Journal of molecular biochemistry.

3D Molecular Modelling of the Helicase Enzyme of the Endemic, Zoonotic Greek Goat Encephalitis Virus

Georgia Tsiliki, Sophia Kossida, Dimitrios Vlachakis, 2013, EANN.

Introductory Chapter: Systems Biology Consolidating State of the Art Genetics and Bioinformatics

Dimitrios Vlachakis, Elias Eliopoulos, Katerina Pierouli, 2019, Systems Biology.

A novel approach to finger vein authentication

Vasileios Megalooikonomou, Dimitrios Vlachakis, Athanassios Skodras, 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017).

Structuprint: a scalable and extensible tool for two-dimensional representation of protein surfaces

Georgia Tsiliki, Dimitrios Vlachakis, Dimitrios Georgios Kontopoulos, 2016, BMC Structural Biology.

Complexity in Medical Informatics

Panayiotis M. Vlamos, Dimitrios Vlachakis, Ilias Kotsireas, 2019, Complex..

The EMBnet International Conference 2020: Bioinformatics Approaches to Precision Research

Domenica D'Elia, César Bonavides-Martínez, Dimitrios Vlachakis, 2021, EMBnet.journal.

Antibody Clustering and 3D Modeling for Neurodegenerative Diseases

Dimitrios Vlachakis, D. Vlachakis, 2021 .

Computer-aided drug design and pharmacophore modelling towards the discovery of novel anti-ebola agents

Dimitrios Vlachakis, Elias Eliopoulos, George P. Chrousos, 2021, EMBnet.journal.

Structure-based design and application of an engineered glutathione transferase for the development of an optical biosensor for pesticides determination.

Dimitrios Vlachakis, Nikolaos E Labrou, A. Papageorgiou, 2019, Biochimica et biophysica acta. General subjects.

Advancing active and healthy ageing with ICT : Early risk detection and intervention Start of project : 1 January 2016 Duration : 36 months Deliverable No : D 4 . 14 Signal processing algorithms for extraction of frailty related indicators

Evangelia Pippa, Dimitrios Vlachakis, Aimilia Papagiannaki, 2016 .

Current state-of-the-art molecular dynamics methods and applications.

Sophia Kossida, Nikitas Papangelopoulos, Dimitrios Vlachakis, 2014, Advances in protein chemistry and structural biology.

Theoretical study of the Usutu virus helicase 3D structure, by means of computer-aided homology modelling

Dimitrios Vlachakis, D. Vlachakis, 2009, Theoretical Biology and Medical Modelling.

Antibodies as stratagems against cancer.

Dimitrios Vlachakis, Louis Papageorgiou, Nguyen Tien Cuong, 2016, Molecular bioSystems.

3D Structural Bioinformatics of Proteins and Antibodies: State of the Art Perspectives and Challenges

George K. Matsopoulos, Sophia Kossida, Dimitrios Vlachakis, 2013 .

Discovery of a novel HCV helicase inhibitor by a de novo drug design approach.

Dimitrios Vlachakis, Colin Berry, Andrea Brancale, 2008, Bioorganic & medicinal chemistry letters.

A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase

Sophia Kossida, Dimitrios Vlachakis, Vassiliki Lila Koumandou, 2013, PeerJ.

An Up-To-Date Review of Piglet Isosporosis: New Insights and Therapeutic Perspectives

Sophia Kossida, Dimitrios Vlachakis, D. Vlachakis, 2013 .

A motif within the armadillo repeat of Parkinson’s-linked LRRK2 interacts with FADD to hijack the extrinsic death pathway

Dimitrios Vlachakis, Leonidas Stefanis, L. Stefanis, 2018, Scientific Reports.

Computer-Aided Drug Design and Biological Evaluation of Novel Anti-Greek Goat Encephalitis Agents

Sophia Kossida, Nikitas Papangelopoulos, Dimitrios Vlachakis, 2013 .

Antisoma Application: A Fully Integrated V-Like Antibodies Platform

Dimitrios Vlachakis, Louis Papageorgiou, D. Vlachakis, 2017 .