Katrina L Kalantar

发表

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

Ryan King, Yun-Fang Juan, Boris Dimitrov, 2020, GigaScience.

Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults

Katrina L Kalantar, N. Neff, J. Derisi, 2022, Nature Microbiology.

Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children

Madeline Y Mayday, Eric D Chow, Matt S Zinter, 2018, bioRxiv.

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

Ryan King, Yun-Fang Juan, Boris Dimitrov, 2020, bioRxiv.

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

Lillian M. Khan, Katrina L Kalantar, E. Crawford, 2019, mBio.

Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system

Katrina L Kalantar, N. Neff, J. Derisi, 2021, medRxiv.

Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children

Katrina L Kalantar, N. Neff, J. Derisi, 2023, The Journal of clinical investigation.

The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients

Katrina L Kalantar, C. Calfee, E. Mick, 2024, Nature communications.

Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia

Cristina M. Tato, Joseph L. DeRisi, Philippe Dussart, 2020, bioRxiv.

Metagenomic Next-Generation Sequencing Detects Pulmonary Pathogens in Hematopoietic Cellular Transplant Patients with Acute Respiratory Illnesses

Katrina L Kalantar, J. Derisi, M. Wilson, 2017, bioRxiv.

Co-occurrence of Campylobacter Species in Children From Eastern Ethiopia, and Their Association With Environmental Enteric Dysfunction, Diarrhea, and Host Microbiome

Katrina L Kalantar, S. McKune, A. Havelaar, 2020, Frontiers in Public Health.

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults

Lillian M. Khan, Katrina L Kalantar, E. Crawford, 2018, Proceedings of the National Academy of Sciences.

Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis

Katrina L Kalantar, J. Derisi, P. Rosenthal, 2018, bioRxiv.

Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota.

Katrina L Kalantar, J. Derisi, C. Calfee, 2019, American journal of physiology. Lung cellular and molecular physiology.

Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections

Katrina L Kalantar, J. Derisi, C. Drakeley, 2023, eLife.

Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia

Katrina L Kalantar, D. Erle, C. Calfee, 2024, Nature communications.