Paul Pavlidis

发表

Text mining for neuroanatomy using WhiteText with an updated corpus and a new web application

Leon French, Po Liu, Olivia Marais, 2015, Front. Neuroinform..

Transcriptomic correlates of neuron electrophysiological diversity

Paul Pavlidis, Shreejoy J. Tripathy, Lilah Toker, 2017, bioRxiv.

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

Paul Pavlidis, Jesse A. Gillis, P. Pavlidis, 2012, PLoS Comput. Biol..

Exploring Gene Expression Data with Class Scores

William Stafford Noble, Paul Pavlidis, Darrin P. Lewis, 2001, Pacific Symposium on Biocomputing.

EGAD: Ultra-fast functional analysis of gene networks

Sara Ballouz, Paul Pavlidis, Melanie Weber, 2016, bioRxiv.

Linking Wikidata to the Semantic Web

Benjamin M. Good, Andrew I. Su, Egon Willighagen, 2017 .

Gene Ontology term overlap as a measure of gene functional similarity

Paul Pavlidis, Meeta Mistry, P. Pavlidis, 2008, BMC Bioinformatics.

Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

J. John Mann, Paul Pavlidis, Etienne Sibille, 2003, BMC Bioinformatics.

Proteome TopFIND 3.0 with TopFINDer and PathFINDer: database and analysis tools for the association of protein termini to pre- and post-translational events

Sharon Yang, Paul Pavlidis, Nikolaus Fortelny, 2014, Nucleic Acids Res..

Support vector machine classification on the web

William Stafford Noble, Paul Pavlidis, Ilan Wapinski, 2004, Bioinform..

A methodology for the analysis of differential coexpression across the human lifespan

Paul Pavlidis, Jesse A. Gillis, P. Pavlidis, 2009, BMC Bioinformatics.

Learning Gene Functional Classifications from Multiple Data Types

Jason Weston, William Stafford Noble, Jinsong Cai, 2002, J. Comput. Biol..

The NeuroDevNet Neuroinformatics Core.

Alan Evans, Paul Pavlidis, Elodie Portales-Casamar, 2011, Seminars in pediatric neurology.

The effect of replication on gene expression microarray experiments

William Stafford Noble, Paul Pavlidis, Qinghong Li, 2003, Bioinform..

Gene functional classification from heterogeneous data

Jason Weston, William Noble Grundy, Jinsong Cai, 2001, RECOMB.

Wikidata as a semantic framework for the Gene Wiki initiative

Benjamin M. Good, Andrew I. Su, Lynn M. Schriml, 2015 .

Cortical functional connectivity decodes subconscious, task-irrelevant threat-related emotion processing

Paul Pavlidis, Joy Hirsch, Spiro P. Pantazatos, 2012, NeuroImage.

Assessing identity, redundancy and confounds in Gene Ontology annotations over time

Paul Pavlidis, Jesse A. Gillis, P. Pavlidis, 2013, Bioinform..

Classification of genes using probabilistic models of microarray expression profiles

William Stafford Noble, Paul Pavlidis, Christopher Tang, 2001, BIOKDD.

Matrix2png: a utility for visualizing matrix data

William Stafford Noble, Paul Pavlidis, P. Pavlidis, 2003, Bioinform..

Cross-Scale Mapping of Gene Expression to Neuroimaging Datasets via Semantic Decomposition

Yves A. Lussier, Jianrong Li, John D. Van Horn, 2007 .

Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition-Dependent Large-Scale Functional Connectivity

Paul Pavlidis, Joy Hirsch, Spiro P. Pantazatos, 2012, PLoS Comput. Biol..

Informatics in neuroscience

Leon French, Paul Pavlidis, P. Pavlidis, 2007, Briefings Bioinform..

The role of indirect connections in gene networks in predicting function

Paul Pavlidis, Jesse A. Gillis, P. Pavlidis, 2011, Bioinform..

ErmineJ: Tool for functional analysis of gene expression data sets

Paul Pavlidis, William Braynen, Homin K. Lee, 2005, BMC Bioinformatics.

Neuroinformatics Original Research Article

Leon French, Paul Pavlidis, Suzanne Lane, 2022 .

Gene Ontology matrices from The role of indirect connections in gene networks in predicting function Gillis, J. and Pavlidis, P. (2011) Bioinformatics, 27 (13). pp. 1860-1866.

Jesse Gillis, Paul Pavlidis, 2011 .

Corrigendum to Cortical functional connectivity decodes subconscious, task-irrelevant threat related emotion processing [Neuroimage 61/4 (2012) 1355–1363]

Paul Pavlidis, Joy Hirsch, Spiro P. Pantazatos, 2013, NeuroImage.

Gene expression Differential coexpression in human tissues and the confounding effect of mean expression levels

Paul Pavlidis, Marjan Farahbod, P. Pavlidis, 2018 .

Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)

Paul Pavlidis, Jesse A. Gillis, P. Pavlidis, 2013, BMC Bioinformatics.

Promoter Region-Based Classification of Genes

Terrence S. Furey, David Haussler, William Noble Grundy, 2000, Pacific Symposium on Biocomputing.

Application and evaluation of automated semantic annotation of gene expression experiments

Leon French, Paul Pavlidis, Suzanne Lane, 2009, Bioinform..

Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes

Yves A. Lussier, Paul Pavlidis, Spiro P. Pantazatos, 2009, Summit on translational bioinformatics.

Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration

Leon French, Paul Pavlidis, Powell Patrick Cheng Tan, 2011, Front. Neuroinform..

Linking Wikidata to the Rest of the Semantic Web

Egon L. Willighagen, Núria Queralt-Rosinach, Benjamin M. Good, 2016, SWAT4LS.

Relationships between Gene Expression and Brain Wiring in the Adult Rodent Brain

Leon French, Paul Pavlidis, P. Pavlidis, 2011, PLoS Comput. Biol..

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data

Xiang Wan, Adam Hall, E. Luke McCarthy, 2012, Bioinform..

Application and evaluation of automated methods to extract neuroanatomical connectivity statements from free text

Yiqi Chen, Leon French, Paul Pavlidis, 2012, Bioinform..

Wikidata as a semantic framework for the Gene Wiki initiative

Benjamin M. Good, Andrew I. Su, Lynn M. Schriml, 2015, bioRxiv.

Sharing and Reusing Gene Expression Profiling Data in Neuroscience

Xiang Wan, Paul Pavlidis, P. Pavlidis, 2007, Neuroinformatics.

Book Review

Paul Pavlidis, 2004, J. Biomed. Informatics.