Cristian Coarfa

发表

Integrative analysis of 111 reference human epigenomes Open

David Haussler, Michael Q. Zhang, Gerald T. Quon, 2015, Nat..

Co-array Fortran Performance and Potential: An NPB Experimental Study

John M. Mellor-Crummey, Cristian Coarfa, Yuri Dotsenko, 2003, LCPC.

Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing

Christopher A. Miller, Christopher A. Miller, Aleksandar Milosavljevic, 2010, BMC Bioinformatics.

Experiences with Co-array Fortran on Hardware Shared Memory Platforms

John M. Mellor-Crummey, Daniel G. Chavarría-Miranda, Cristian Coarfa, 2004, LCPC.

PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction

John M. Mellor-Crummey, Luay Nakhleh, Cristian Coarfa, 2005, 11th International Conference on Parallel and Distributed Systems (ICPADS'05).

Enabling Atlas2 personal genome analysis on the cloud

Aleksandar Milosavljevic, Cristian Coarfa, Matthew N. Bainbridge, 2011, 2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

An emerging co-array fortran compiler.

Cristian Coarfa, Yuri Dotsenko, 2003, PPoPP 2003.

An evaluation of global address space languages: co-array fortran and unified parallel C

Tarek A. El-Ghazawi, François Cantonnet, Yiyi Yao, 2005, PPoPP.

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences

Jun Ma, Maria Diaz, Aleksandar Milosavljevic, 2012, BMC Bioinformatics.

An emerging co-array fortran compiler (citation_only)

Cristian Coarfa, Yuri Dotsenko, 2003, PPoPP '03.

Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies

Aleksandar Milosavljevic, Cristian Coarfa, A. Milosavljevic, 2007, Pacific Symposium on Biocomputing.

PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction

John M. Mellor-Crummey, Luay Nakhleh, Cristian Coarfa, 2005, ICPADS.

A Multi-Platform Co-Array Fortran Compiler

John M. Mellor-Crummey, Cristian Coarfa, Yuri Dotsenko, 2004, IEEE PACT.

An integrative variant analysis suite for whole exome next-generation sequencing data

Aleksandar Milosavljevic, Cristian Coarfa, Fuli Yu, 2012, BMC Bioinformatics.

Random 3-SAT: The Plot Thickens

Devika Subramanian, Moshe Y. Vardi, Cristian Coarfa, 2000, Constraints.

Portable high performance and scalability of partitioned global address space languages

Cristian Coarfa, John Mellor-Crummey, J. Mellor-Crummey, 2007 .

Experiences with Sweep3D implementations in Co-array Fortran

John M. Mellor-Crummey, Cristian Coarfa, Yuri Dotsenko, 2006, The Journal of Supercomputing.

Scalability analysis of SPMD codes using expectations

Nathan Froyd, John M. Mellor-Crummey, Cristian Coarfa, 2007, ICS '07.

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools

Aleksandar Milosavljevic, Viren Amin, Cristian Coarfa, 2014, BMC Bioinformatics.

Performance analysis of TLS Web servers

Dan S. Wallach, Peter Druschel, Cristian Coarfa, 2006, TOCS.

Random 3-SAT: The Plot Thickens

Devika Subramanian, Moshe Y. Vardi, Cristian Coarfa, 2000, CP.

Sequence Alignment, Analysis, and Bioinformatic Pipelines

Cristian Coarfa, Fuli Yu, F. Yu, 2013 .

Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines.

Christopher A. Miller, Aleksandar Milosavljevic, Cristian Coarfa, 2011, Cancer genetics.

Intermediate DNA methylation is a conserved signature of genome regulation

Ting Wang, Manolis Kellis, Martin Hirst, 2015, Nature Communications.

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy

Aleksandar Milosavljevic, Cristian Coarfa, Curtis Huttenhower, 2012, PloS one.

A genome-wide search for promoters that respond to increased MYCN reveals both new oncogenic and tumor suppressor microRNAs associated with aggressive neuroblastoma.

Aleksandar Milosavljevic, Cristian Coarfa, Eugene S. Kim, 2011, Cancer research.

Atlas2 Cloud: a framework for personal genome analysis in the cloud

Aleksandar Milosavljevic, Cristian Coarfa, Fuli Yu, 2012, BMC Genomics.

miRNA data analysis: next-gen sequencing.

Cristian Coarfa, Benjamin Soibam, Arpit Tandon, 2012, Methods in molecular biology.

The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders

Kevin P. White, Chunling Zhang, Cristian Coarfa, 2018, Science Translational Medicine.

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome.

Aleksandar Milosavljevic, Cristian Coarfa, Kevin Riehle, 2011, Gastroenterology.

The Landscape of microRNA Targeting in Prostate Cancer Defined by AGO-PAR-CLIP1

Cristian Coarfa, Mark P. Hamilton, Sean E. McGuire, 2016, Neoplasia.

Proinflammatory Role for let-7 MicroRNAS in Experimental Asthma*

Aleksandar Milosavljevic, Cristian Coarfa, Benjamin Soibam, 2010, The Journal of Biological Chemistry.

PAPD5-mediated 3′ adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

Piero Carninci, Yoshihide Hayashizaki, Joost Boele, 2014, Proceedings of the National Academy of Sciences.

SOX2 regulates YAP1 to maintain stemness and determine cell fate in the osteo-adipo lineage.

Cristian Coarfa, P. Gunaratne, C. Coarfa, 2013, Cell reports.