Joseph R. Ecker

发表

Integrative analysis of 111 reference human epigenomes Open

David Haussler, Michael Q. Zhang, Gerald T. Quon, 2015, Nat..

STAR: an integrated solution to management and visualization of sequencing data

Yun Zhu, Wei Wang, Jie Liu, 2013, Bioinform..

HiCluster: A Robust Single-Cell Hi-C Clustering Method Based on Convolution and Random Walk

Terrence J. Sejnowski, Jian Peng, Jesse R. Dixon, 2018 .

Detection of allele-specific methylation through a generalized heterogeneous epigenome model

Joseph R. Ecker, Qian Peng, J. Ecker, 2012, Bioinform..

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

Kamal Kishore, Marco J. Morelli, Valerio Bianchi, 2015, BMC Bioinformatics.

Chromatin architecture reorganization during stem cell differentiation

Jing Liang, Zhen Ye, Huimin Zhao, 2015, Nature.

Comparison of the transcriptional landscapes between human and mouse tissues

Thomas R. Gingeras, William C. Chapman, Joseph R. Ecker, 2014, Proceedings of the National Academy of Sciences.

An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community

Christopher J. Rawlings, Paul N. Schofield, Andrew J. Millar, 2010, Plant Cell.

Mitogen-activated protein kinase cascades in plants: a new nomenclature.

Kazuo Shinozaki, Heribert Hirt, Joseph R. Ecker, 2002, Trends in plant science.

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Detlef Weigel, Joseph R. Ecker, Todd P. Michael, 2017, bioRxiv.

Corrigendum to ‘‘Applications of DNA tiling arrays for whole-genome analysis’’ [Genomics 85 (2005) 1–15]

Joseph R. Ecker, Todd C. Mockler, Steven E. Jacobsen, 2005 .

Systematic mapping of chromatin state landscapes during mouse development

Bing Ren, J. Michael Cherry, Axel Visel, 2017, bioRxiv.

Erratum: Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape (Cell (2016) 165(5) (1280–1292))

Joseph R. Ecker, Mary Galli, Andrea Gallavotti, 2016 .

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

Bjarni J. Vilhjálmsson, Muhammad Ali Amer, Paul Marjoram, 2010 .

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

Christof Koch, Brian D. Aevermann, Richard H. Scheuermann, 2020, bioRxiv.

Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape

Joseph R. Ecker, Mary Galli, Andrea Gallavotti, 2016, Cell.

Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome

Joseph R. Ecker, Ueli Grossniklaus, Qian Peng, 2007, Cell.

Single-cell multi-omic profiling of chromatin conformation and DNA methylome

Conor Fitzpatrick, Jesse R. Dixon, Joseph R. Ecker, 2018 .

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells

Philipp Kapranov, George Q. Daley, X. Shirley Liu, 2011, Nature.

HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots

Paul Shinn, Joseph R. Ecker, F. Bushman, 2002, Cell.

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Paul Shinn, Andre Marziali, William C. Nierman, 2000, Nature.

An ABA-increased interaction of the PYL6 ABA receptor with MYC2 Transcription Factor: A putative link of ABA and JA signaling

Joseph R. Ecker, Zixing Li, Julian I. Schroeder, 2016, Scientific Reports.

CTR1, a negative regulator of the ethylene response pathway in arabidopsis, encodes a member of the Raf family of protein kinases

Joseph R. Ecker, Joseph J. Kieber, J. Ecker, 1993, Cell.

CrY2H-seq: a massively-multiplexed assay for deep coverage interactome mapping

Joseph R. Ecker, Mary Galli, Shao-shan Carol Huang, 2017, Nature Methods.

Dynamic DNA methylation reconfiguration during seed development and germination

Joseph R. Ecker, J. Ecker, Joseph R. Nery, 2017, Genome Biology.

Genotypic variation of gene expression during the soybean innate immunity response

Trupti Joshi, Gary Stacey, Dong Xu, 2014, Plant Genetic Resources.

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

Terrence J. Sejnowski, Sean R. Eddy, Fred P. Davis, 2015, Neuron.

A complete BAC-based physical map of the Arabidopsis thaliana genome

Sebastian Kloska, Thomas Altmann, Hans Lehrach, 1999, Nature Genetics.

A transcription factor hierarchy defines an environmental stress response network

Ziv Bar-Joseph, Joseph R. Ecker, Aaron Wise, 2016, Science.

An alternative pluripotent state confers interspecies chimaeric competency

Juan Carlos Izpisua Belmonte, Joseph R. Ecker, Yupeng He, 2015, Nature.

Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation

Joseph R. Ecker, Edward E. Farmer, J. Ecker, 2005, Development.

Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis

Joseph R. Ecker, J. Ecker, J. Alonso, 2006, Nature Reviews Genetics.

Erratum: Literature-curated protein interaction datasets (Nature Methods (2009) 6 (39-46))

Marc Vidal, Frederick P. Roth, Michael E. Cusick, 2009 .