Héctor Corrada Bravo

发表

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution

Chengxi Ye, Chiaowen Hsiao, Héctor Corrada Bravo, 2014, Bioinform..

Privacy-preserving microbiome analysis using secure computation

Xiao Wang, Bobby Bhattacharjee, Justin Wagner, 2015, bioRxiv.

Epiviz File Server: Query, transform and interactively explore data from indexed genomic files

Yifan Yang, Héctor Corrada Bravo, Jayaram Kancherla, 2019, bioRxiv.

The partitioned LASSO-patternsearch algorithm with application to gene expression data

Stephen J. Wright, Rafael A. Irizarry, Grace Wahba, 2012, BMC Bioinformatics.

Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming

Stephen J. Wright, Grace Wahba, Héctor Corrada Bravo, 2009, AISTATS.

Improving Long-Horizon Forecasts with Expectation-Biased LSTM Networks pdf

Héctor Corrada Bravo, Timothy Wood, Aya Abdelsalam Ismail, 2018, arXiv.org.

Quickly compose custom interactive genomic visualization apps in R/Bioc with epiviz components

Héctor Corrada Bravo, Jayaram Kancherla, 2020 .

scGAIN: Single Cell RNA-seq Data Imputation using Generative Adversarial Networks

Soheil Feizi, Héctor Corrada Bravo, Jayaram Kancherla, 2019, bioRxiv.

Sherpa: Leveraging User Attention for Computational Steering in Visual Analytics

Niklas Elmqvist, Zhe Cui, Héctor Corrada Bravo, 2019, 2019 IEEE Visualization in Data Science (VDS).

BatchQC: interactive software for evaluating sample and batch effects in genomic data

Benjamin Haibe-Kains, John Quackenbush, Jeffrey T. Leek, 2016, Bioinform..

A Framework for Set-Oriented Computation in Inductive Logic Programming and Its Application in Generalizing Inverse Entailment

Raghu Ramakrishnan, David Page, Vítor Santos Costa, 2005, ILP.

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

Rafael A. Irizarry, Andrew P. Feinberg, Martin J. Aryee, 2014, Bioinform..

Optimizing mpf queries: decision support and probabilistic inference

Raghu Ramakrishnan, Héctor Corrada Bravo, R. Ramakrishnan, 2007, SIGMOD '07.

Gene expression anti-profiles as a basis for accurate universal cancer signatures

Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, 2012, BMC Bioinformatics.

Input-Cell Attention Reduces Vanishing Saliency of Recurrent Neural Networks

Soheil Feizi, Héctor Corrada Bravo, Mohamed K. Gunady, 2019, NeurIPS.

Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models

Héctor Corrada Bravo, Kristine E Lee, Barbara E K Klein, 2009, Proceedings of the National Academy of Sciences.

Yanagi: Fast and interpretable segment-based alternative splicing and gene expression analysis

Héctor Corrada Bravo, Mohamed K. Gunady, Stephen M. Mount, 2019, BMC Bioinformatics.

Automated classification of bird and amphibian calls using machine learning: A comparison of methods

Héctor Corrada Bravo, Miguel A. Acevedo, T. Mitchell Aide, 2009, Ecol. Informatics.

Epiviz: interactive visual analytics for functional genomics data

Héctor Corrada Bravo, Florin Chelaru, Naomi Goldstein, 2014, Nature Methods.

Analysis and correction of compositional bias in sparse sequencing count data

Stephanie C. Hicks, Héctor Corrada Bravo, Sridhar Hannenhalli, 2017 .

Proactive visual and statistical analysis of genomic data in Epiviz

Niklas Elmqvist, Héctor Corrada Bravo, Jayaram Kancherla, 2019, Bioinform..

Fast and interpretable alternative splicing and differential gene-level expression analysis using transcriptome segmentation with Yanagi

Héctor Corrada Bravo, Stephen M. Mount, Mohamed K Gunady, 2018, bioRxiv.

Model-based quality assessment and base-calling for second-generation sequencing data.

Héctor Corrada Bravo, Rafael A Irizarry, 2010, Biometrics.

Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification

Héctor Corrada Bravo, Mohamed K. Gunady, Stephen M. Mount, 2017, WABI.

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

Rob Patro, Avi Srivastava, Hirak Sarkar, 2020, Bioinformatics.

Increased Methylation Variation in Epigenetic Domains across Cancer Types

Héctor Corrada Bravo, 2012, RECOMB.

methylFlow: cell-specific methylation pattern reconstruction from high-throughput bisulfite-converted DNA sequencing

Héctor Corrada Bravo, Faezeh Dorri, Lee Mendelowitz, 2016, Bioinform..

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data

Rob Patro, Avi Srivastava, Hirak Sarkar, 2020, bioRxiv.

metagenomeFeatures: An R package for working with 16S rRNA reference databases and marker-gene survey feature data

Héctor Corrada Bravo, Joseph N. Paulson, Jayaram Kancherla, 2018, bioRxiv.

Intensity normalization improves color calling in SOLiD sequencing

Héctor Corrada Bravo, Rafael A Irizarry, H. Bravo, 2010, Nature Methods.

Graph-based data analysis: tree-structured covariance estimation, prediction by regularized kernel estimation and aggregate database query processing for probabilistic inference

Raghu Ramakrishnan, Grace Wahba, Héctor Corrada Bravo, 2008 .

Robust methods for differential abundance analysis in marker gene surveys

Mihai Pop, Héctor Corrada Bravo, Joseph N Paulson, 2013, Nature Methods.

Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis

Héctor Corrada Bravo, H. Bravo, Wikum Dinalankara, 2015, Cancer informatics.