Kevin P. Keegan

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Metagenomics Analysis Tools for R

Daniel Braithwaite, Kevin P. Keegan, 2014 .

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE

Andreas Wilke, Travis Harrison, Jared Wilkening, 2012, PLoS Comput. Biol..

Characterizing Sequencing Samples with k-mer Spectra for Good and Evil

Folker Meyer, Kevin P. Keegan, William L. Trimble, 2014 .

The MG-RAST metagenomics database and portal in 2015

Andreas Wilke, Jared Bischof, Tobias Paczian, 2015, Nucleic Acids Res..

Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes

Kevin P. Keegan, Ji-Ping Wang, Ravi Allada, 2007, PLoS Comput. Biol..

Metagenomics Analysis Tools [R package matR version 0.9.1]

Kevin P. Keegan, Daniel Braithwaite, 2018 .

The DOE Systems Biology Knowledgebase (KBase)

Fangfang Xia, Rick Stevens, Mark Gerstein, 2016, bioRxiv.

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal

Andreas Wilke, Jared Wilkening, Folker Meyer, 2012, BMC Bioinformatics.

clockwork orange Encodes a Transcriptional Repressor Important for Circadian-Clock Amplitude in Drosophila

Kevin P. Keegan, Suraj Pradhan, R. Allada, 2007, Current Biology.

Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset

Kevin P. Keegan, Peter E. Larsen, J. Gilbert, 2011, Microbial Informatics and Experimentation.

Connecting genotype to phenotype in the era of high-throughput sequencing.

Rick L. Stevens, Kevin P. Keegan, R. Overbeek, 2011, Biochimica et biophysica acta.

KBase: The United States Department of Energy Systems Biology Knowledgebase

Rick L. Stevens, James J. Davis, Kevin P. Keegan, 2018, Nature Biotechnology.

MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.

Elizabeth M Glass, Folker Meyer, Kevin P. Keegan, 2016, Methods in molecular biology.

The Hospital Microbiome Project: Meeting Report for the 1st Hospital Microbiome Project Workshop on sampling design and building science measurements, Chicago, USA, June 7th-8th 2012

Kevin Keegan, Hal Levin, Rob Knight, 2013, Standards in genomic sciences.

A dynamic role for the mushroom bodies in promoting sleep in Drosophila

Kevin P. Keegan, Ravi Allada, R. Allada, 2006, Nature.

Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River

Kevin P. Keegan, Hugh L. Eaves, R. Franklin, 2015, Standards in genomic sciences.

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

Kevin P. Keegan, D. Antonopoulos, Folker Meyer, 2013, Microbiome.

Long-term dendritic spine stability in the adult cortex

Kevin P. Keegan, V. Kilman, R. Allada, 2022 .

Structure, fluctuation and magnitude of a natural grassland soil metagenome

Folker Meyer, Kevin P. Keegan, Eric Pelletier, 2012, The ISME Journal.

Locomotor activity level monitoring using the Drosophila Activity Monitoring (DAM) System.

Kevin P. Keegan, Ravi Allada, Cory Pfeiffenberger, 2010, Cold Spring Harbor protocols.

Microbial Metabolism Shifts Towards an Adverse Profile with Supplementary Iron in the TIM-2 In vitro Model of the Human Colon

Kevin P. Keegan, Fiona G. G. Nielsen, J. Weir, 2016, Front. Microbiol..

A metagenomics portal for a democratized sequencing world.

Andreas Wilke, Elizabeth M Glass, Daniela Bartels, 2013, Methods in enzymology.

A role for casein kinase 2α in the Drosophila circadian clock

Kevin P. Keegan, V. Kilman, R. Allada, 2002, Nature.

A role for casein kinase 2alpha in the Drosophila circadian clock.

Kevin P. Keegan, V. Kilman, R. Allada, 2002, Nature.

The Hospital Microbiome Project: Meeting report for the 2nd Hospital Microbiome Project, Chicago, USA, January 15th, 2013

Kevin Keegan, Mark Hernandez, Hal Levin, 2013, Standards in genomic sciences.

Processing sleep data created with the Drosophila Activity Monitoring (DAM) System.

Kevin P. Keegan, Cory Pfeiffenberger, R. Allada, 2010, Cold Spring Harbor protocols.

Drosophila Clock Can Generate Ectopic Circadian Clocks

Kevin P. Keegan, V. Kilman, R. Allada, 2003, Cell.

Processing circadian data collected from the Drosophila Activity Monitoring (DAM) System.

Kevin P. Keegan, Cory Pfeiffenberger, R. Allada, 2010, Cold Spring Harbor protocols.

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants

Kevin P. Keegan, D. Antonopoulos, Folker Meyer, 2013, Microbiome.

Skyport - Container-Based Execution Environment Management for Multi-cloud Scientific Workflows

Andreas Wilke, Jared Bischof, Narayan Desai, 2014, 2014 5th International Workshop on Data-Intensive Computing in the Clouds.