Zachary N. Flamholz

Word embeddings trained on published case reports are lightweight, effective for clinical tasks, and free of protected health information

Lyle H. Ungar, Gary E. Weissman, Zachary N. Flamholz, 2019, J. Biomed. Informatics.

modEnrichr: a suite of gene set enrichment analysis tools for model organisms

Maxim V. Kuleshov, Megan L. Wojciechowicz, Zachary N. Flamholz, 2019, Nucleic Acids Res..

FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources.

Daniel J Cooper, Kathleen M Jagodnik, Denis Torre, 2019, Cell systems.

FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

Michel Dumontier, Denis Torre, Avi Ma'ayan, 2019, bioRxiv.

Large language models improve annotation of viral proteins

Zachary N. Flamholz, S. Biller, L. Kelly, 2023, Research square.

H/ACA snRNP–dependent ribosome biogenesis regulates translation of polyglutamine proteins

Zachary N. Flamholz, E. R. Gavis, Elliot T. Martin, 2023, Science advances.

Pseudouridine-dependent ribosome biogenesis regulates translation of polyglutamine proteins during Drosophila oogenesis

Zachary N. Flamholz, E. R. Gavis, Elliot T. Martin, 2022, bioRxiv.