Konstantinos D. Tsirigos

发表

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins

Arne Elofsson, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2016, Bioinform..

Improved topology prediction using the terminal hydrophobic helices rule

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Neil D. Rawlings, Robert D. Finn, Alex Bateman, 2015, Database J. Biol. Databases Curation.

Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2016, Bioinform..

Combined prediction of Tat and Sec signal peptides with hidden Markov models

Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, 2010, Bioinform..

Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2008, J. Bioinform. Comput. Biol..

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015, Nucleic Acids Res..

OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Nucleic Acids Res..

CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2012, SETN.

PRODRES: Fast protein searches using a protein domain-reduced database

Arne Elofsson, Nanjiang Shu, Christoph Peters, 2017 .

GWAR: robust analysis and meta‐analysis of genome‐wide association studies

Arne Elofsson, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2017, Bioinform..

Extending hidden Markov models to allow conditioning on previous observations

Ioannis A Tamposis, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2018, J. Bioinform. Comput. Biol..

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins

Stavros J. Hamodrakas, Pantelis G. Bagos, Konstantinos D. Tsirigos, 2010, Bioinform..

DisProt 7.0: a major update of the database of disordered proteins

Sonia Longhi, Silvio C. E. Tosatto, Arne Elofsson, 2016, Nucleic Acids Res..

Creating a specialist protein resource network

Neil D. Rawlings, Alex Bateman, Bernard Henrissat, 2015 .

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

Arne Elofsson, Nanjiang Shu, Lukas Käll, 2015 .

Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits

Konstantinos D. Tsirigos, M. McCarthy, C. Howald, 2023, Nature communications.

SignalP 6.0 predicts all five types of signal peptides using protein language models

Konstantinos D. Tsirigos, Magnús Halldór Gíslason, S. Brunak, 2022, Nature Biotechnology.

DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks

Konstantinos D. Tsirigos, A. Krogh, Henrik Nielsen, 2022, bioRxiv.

Bioinformatics Methods for Topology Prediction of Membrane Proteins

Konstantinos D. Tsirigos, K. Tsirigos, 2017 .

SignalP 5.0 improves signal peptide predictions using deep neural networks

Konstantinos D. Tsirigos, S. Brunak, O. Winther, 2019, Nature Biotechnology.

The next-generation Open Targets Platform: reimagined, redesigned, rebuilt

Konstantinos D. Tsirigos, E. McDonagh, I. Dunham, 2022, Nucleic Acids Res..

The landscape of eukaryotic transmembrane beta barrel proteins.

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, H. Nielsen, 2020, Journal of proteome research.

Prediction of signal peptides in archaea.

Konstantinos D. Tsirigos, T. Liakopoulos, P. Bagos, 2008, Protein engineering, design & selection : PEDS.

Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model.

Pantelis G Bagos, Konstantinos D Tsirigos, Konstantinos D. Tsirigos, 2008, Journal of proteome research.

Hidden neural networks for transmembrane protein topology prediction

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, P. Bagos, 2021, Computational and structural biotechnology journal.

OMPdb : a database of b-barrel outer membrane proteins from Gram-negative bacteria

Konstantinos D. Tsirigos, P. Bagos, S. Hamodrakas, 2010 .

A Brief History of Protein Sorting Prediction

Søren Brunak, Henrik Nielsen, Konstantinos D Tsirigos, 2019, The Protein Journal.

Profiles of Glucose Metabolism in Different Prediabetes Phenotypes, Classified by Fasting Glycemia, 2-Hour OGTT, Glycated Hemoglobin, and 1-Hour OGTT: An IMI DIRECT Study

Konstantinos D. Tsirigos, M. McCarthy, O. Pedersen, 2021, Diabetes.

Processes Underlying Glycemic Deterioration in Type 2 Diabetes

Konstantinos D. Tsirigos, Jimmy D Bell, O. Pedersen, 2020 .

Inferring causal pathways between metabolic processes and liver fat accumulation: an IMI DIRECT study

Konstantinos D. Tsirigos, Jimmy D Bell, M. Ridderstråle, 2021, medRxiv.

OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins

Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, P. Bagos, 2021, Frontiers in Bioinformatics.

A guideline to proteome‐wide α‐helical membrane protein topology predictions

Konstantinos D. Tsirigos, L. Käll, A. Elofsson, 2012, Proteomics.

Dietary metabolite profiling brings new insight into the relationship between nutrition and metabolic risk: An IMI DIRECT study

Konstantinos D. Tsirigos, Jimmy D Bell, M. McCarthy, 2020, EBioMedicine.

SignalP 6.0 achieves signal peptide prediction across all types using protein language models

Konstantinos D. Tsirigos, Magnús Halldór Gíslason, S. Brunak, 2021, bioRxiv.

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation

Silvio C. E. Tosatto, Cristina Marino Buslje, Konstantinos D. Tsirigos, 2021, Nucleic Acids Res..

SignalP 5.0 improves signal peptide predictions using deep neural networks

Konstantinos D. Tsirigos, S. Brunak, O. Winther, 2019, Nature Biotechnology.

Semi-supervised learning of Hidden Markov Models for biological sequence analysis

Pantelis G Bagos, Panagiota I Kontou, Ioannis A Tamposis, 2018, Bioinform..

Topology of membrane proteins-predictions, limitations and variations.

Arne Elofsson, Nanjiang Shu, Konstantinos D Tsirigos, 2018, Current opinion in structural biology.

Processes Underlying Glycemic Deterioration in Type 2 Diabetes: An IMI DIRECT Study

Konstantinos D. Tsirigos, Jimmy D Bell, M. McCarthy, 2020, Diabetes Care.