Vladimir B. Bajic

Vladimir B. Bajic, Dinesh K. Kaushik, Benoit Marchand, 2011, 2011 International Conference for High Performance Computing, Networking, Storage and Analysis (SC).

ROBUST FUZZY DISCRETE SLIDING MODE CONTROL BASED ON LYAPUNOVS DIRECT METHOD

Vladimir B. Bajic, Daohang Sha, V. Bajic, 2000 .

Semantic prioritization of novel causative genomic variants

Vladimir B. Bajic, Paul N. Schofield, Maxat Kulmanov, 2017, PLoS Comput. Biol..

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes

Liang Yang, Vladimir B. Bajic, Jun Kawai, 2006, BMC Bioinformatics.

Neural Network System for Promoter Recognition

Vladimir B. Bajic, Ivan V. Bajic, V. Bajic, 2000 .

Genome-wide analysis of regions similar to promoters of histone genes

Limsoon Wong, Vladimir B. Bajic, Rajesh Chowdhary, 2010, BMC Systems Biology.

DASPfind: new efficient method to predict drug–target interactions

Panos Kalnis, Vladimir B. Bajic, Wail Ba-alawi, 2016, Journal of Cheminformatics.

Intelligent Extraction Versus Advanced Query: Recognize Transcription Factors from Databases

Vladimir B. Bajic, See-Kiong Ng, Zhuo Zhang, 2006, PRIB.

Towards Chereme Based Dynamic Sign Language Gesture Recognition System

Vladimir B. Bajic, Addmore Machanja, 2011 .

Special issue: Computer-Based Control Systems

Vladimir B. Bajic, Arthur Jutan, V. Bajic, 2000, Int. J. Comput. Syst. Signals.

An Intelligent System for Vertebrate Promoter Recognition

Vladimir B. Bajic, Vladimir Brusic, Allen Chong, 2002, IEEE Intell. Syst..

TUNING THE DRAGON PROMOTER FINDER SYSTEM FOR HUMAN PROMOTER RECOGNITION

Vladimir B. Bajic, Allen Chong, 2004 .

Modeling transcription termination of selected gene groups using support vector machine

Vladimir B. Bajic, Sanjib Kumar Panda, Jian-Xin Xu, 2008, 2008 IEEE International Joint Conference on Neural Networks (IEEE World Congress on Computational Intelligence).

Software of prediction models for 12 poly(A) signal variants in human and feature vectors of regions covering [-300,poly(A) hexamer,+300] for these 12 signal variants.

Vladimir B. Bajic, Fahad Albalawi, Taous-Meriem Laleg-Kirati, 2018 .

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

F. A. Kolpakov, Vladimir B. Bajic, Arturo Magana-Mora, 2017, Nucleic Acids Res..

Automated Counting of Colony Forming Units Using Deep Transfer Learning From a Model for Congested Scenes Analysis

Xin Gao, Vladimir B. Bajic, Magbubah Essack, 2020, IEEE Access.

Additional file 18

Limsoon Wong, Vladimir B. Bajic, Rajesh Chowdhary, 2010 .

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

Hierarchical Identification of Linear Large-Scale Process Plants

Vladimir B. Bajic, Boris R. Jankovic, 1997 .

Neural network clustering of DNA data for improved PWM determination

Vladimir B. Bajic, V. Bajic, 2000 .

Promoter modeling: the case study of mammalian histone promoters

Vladimir B. Bajic, Rajesh Chowdhary, R. Ayesha Ali, 2005, Bioinform..

Proteome-level assessment of origin, prevalence and function of leucine-aspartic acid (LD) motifs

Xin Gao, Vladimir B. Bajic, Franceline Huser, 2020, Bioinform..

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers

Vladimir B. Bajic, Haitham Ashoor, Dimitris Kleftogiannis, 2018, Genom. Proteom. Bioinform..

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli

Vladimir B. Bajic, Aleksandar Radovanovic, Salim Bougouffa, 2016, Bioinform..

Database for exploration of functional context of genes implicated in ovarian cancer

Vladimir B. Bajic, Sebastian Schmeier, Alan Christoffels, 2008, Nucleic Acids Res..

Additional file 17

Limsoon Wong, Vladimir B. Bajic, Rajesh Chowdhary, 2010 .

Characterization and identification of long non-coding RNAs based on feature relationship

Vladimir B. Bajic, Zhang Zhang, Guangyu Wang, 2019, Bioinform..

DEOP: a database on osmoprotectants and associated pathways

Vladimir B. Bajic, Magbubah Essack, Aleksandar Radovanovic, 2014, Database J. Biol. Databases Curation.

Content analysis of the core promoter region of human genes

Vladimir B. Bajic, Vidhu Choudhary, Chuan Koh Hock, 2003, Silico Biol..

Stability robustness with respect to resistances of a class of singular nonlinear circuits

Vladimir B. Bajic, Mirko M. Milić, 1989 .

ERGDB: Estrogen Responsive Genes Database

Vladimir B. Bajic, Hao Han, Suisheng Tang, 2004, Nucleic Acids Res..

Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining

Vladimir B. Bajic, Zhuo Zhang, Li Zuo, 2004, Nucleic Acids Res..

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences

Vladimir B. Bajic, John A. C. Archer, Rajesh Chowdhary, 2011, Bioinform..

Additional file 19

Limsoon Wong, Vladimir B. Bajic, Rajesh Chowdhary, 2010 .

Nonlinear self-turning controller for Hammerstein plants with application to a pressure tank

Vladimir B. Bajic, Arthur Jutan, Zi Ma, 2000, Int. J. Comput. Syst. Signals.

Knowledge Exploration from Big Data in Biomedicine

Vladimir B. Bajic, V. Bajic, 2016 .

DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning

Panos Kalnis, Vladimir B. Bajic, Othman Soufan, 2016, Journal of Cheminformatics.

Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes

Vladimir B. Bajic, Seng Hong Seah, V. Bajic, 2003, Nucleic Acids Res..

BIOLOGICAL DATABASES AND WEB SERVICES: METRICS FOR QUALITY

Tin Wee Tan, Joo Chuan Tong, Vladimir B. Bajic, 2005 .

New model and sliding mode control of hydraulic elevator velocity tracking system

Vladimir B. Bajic, Huayong Yang, Daohang Sha, 2002, Simul. Pract. Theory.

Actual classification performance for Medelon dataset using KNN classifier.

Panos Kalnis, Vladimir B. Bajic, Othman Soufan, 2015 .

Computational Drug-target Interaction Prediction based on Graph Embedding and Graph Mining

Vladimir B. Bajic, Haitham Ashoor, Magbubah Essack, 2020 .

Genetic algorithms and extraction of rules for detection of short DNA motifs

Vladimir B. Bajic, P. Y. Tabakov, V. Bajic, 2000, Int. J. Comput. Syst. Signals.

Bioinformatics Applications Note Sequence Analysis Dragon Polya Spotter: Predictor of Poly(a) Motifs within Human Genomic Dna Sequences

Vladimir B. Bajic, John A. C. Archer, Rajesh Chowdhary, 2022 .

PIMiner: a web tool for extraction of protein interactions from biomedical literature

Vladimir B. Bajic, Sin Lam Tan, Rajesh Chowdhary, 2013, Int. J. Data Min. Bioinform..

Comparing the Success of Different Prediction Software in Sequence Analysis: A Review

Vladimir B. Bajic, V. Bajic, 2000, Briefings Bioinform..

Finding functional promoter motifs by computational methods: a word of caution

Limsoon Wong, Vladimir B. Bajic, Rajesh Chowdhary, 2006, Int. J. Bioinform. Res. Appl..

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

Vladimir B. Bajic, Vladimir Brusic, Judice L. Y. Koh, 2002, Bioinform..

Adaptive controller for a class of systems with saturation nonlinearity

Vladimir B. Bajic, Z. Ma, 2000 .

FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes

Vladimir B. Bajic, Guanglan Zhang, Allen Chong, 2003, Nucleic Acids Res..

HOW NEURAL NETWORKS FIND PROMOTERS USING RECOGNITION OF MICRO-STRUCTURAL PROMOTER COMPONENTS

Vladimir B. Bajic, Ivan V. Bajic, 2004 .

AI-based discrete sliding-mode control for real-time implementation

Vladimir B. Bajic, Xinzhong Li, Daohang Sha, 2000, Int. J. Comput. Syst. Signals.

OVERVIEW OF TEXT-MINING IN LIFE-SCIENCES

Vladimir B. Bajic, Kanagasabai Rajaraman, Li Zuo, 2005 .

Fuzzy logic enhancement of antiwindup PID control for servo systems

Vladimir B. Bajic, Poobalan Govender, V. Bajic, 1997 .

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions

Vladimir B. Bajic, Sebastian Schmeier, Magbubah Essack, 2016, Nucleic Acids Res..

KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data

Vladimir B. Bajic, Takashi Gojobori, Carlos M. Duarte, 2020, Scientific Reports.

Combining Position Weight Matrices and Document-Term Matrix for Efficient Extraction of Associations of Methylated Genes and Diseases from Free Text

Vladimir B. Bajic, Roberto Incitti, Hicham Mansour, 2013, PloS one.

Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities

Vladimir B. Bajic, Magbubah Essack, Somayah Albaradei, 2019, Front. Chem..

Comparison of core promoters in Fugu rubripes and human

Vladimir B. Bajic, Alan Christoffels, Sin Lam Tan, 2005, APBC.

Protein domain recurrence and order can enhance prediction of protein functions

Daisuke Kihara, Vladimir B. Bajic, Xin Gao, 2012, Bioinform..

Extracting Information for Meaningful Function Inference through Text-Mining

Vladimir B. Bajic, Zhuo Zhang, Li Zuo, 2006 .

Editorial message

Vladimir B. Bajic, V. Bajic, 2000, Int. J. Comput. Syst. Signals.

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs

Jun Yu, Ang Li, Vladimir B. Bajic, 2014, Nucleic Acids Res..

Enhancement of Plant-Microbe Interactions Using a Rhizosphere Metabolomics-Driven Approach and Its Application in the Removal of Polychlorinated Biphenyls1,212

Vladimir B. Bajic, Kothandaraman Narasimhan, Sanjay Swarup, 2003, Plant Physiology.

Aerobic methanotrophic communities at the Red Sea brine-seawater interface

Vladimir B. Bajic, Magbubah Essack, Intikhab Alam, 2014, Front. Microbiol..

Use of Artificial Neural Networks in Improving Renal Transplantation Outcomes

Vladimir B. Bajic, Vladimir Brusic, Nikolai Petrovsky, 2002 .

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease

Carsten O. Daub, Vladimir B. Bajic, Tom C. Freeman, 2016, bioRxiv.

Promoter Structures Conserved between Homo Sapiens, Mus Musculus and Drosophila Melanogaster

Vladimir B. Bajic, John A. C. Archer, Ulf Schaefer, 2012 .

Recently Confirmed Apoptosis-Inducing Lead Compounds Isolated from Marine Sponge of Potential Relevance in Cancer Treatment

Vladimir B. Bajic, Magbubah Essack, V. Bajic, 2011, Marine drugs.

Mining Chemical Activity Status from High-Throughput Screening Assays

Panos Kalnis, Vladimir B. Bajic, Othman Soufan, 2015, PloS one.

Data Integration in Bioinformatics: Current Efforts and Challenges

Kei-Hoi Cheung, Vladimir B. Bajic, Jeffrey P. Townsend, 2011 .

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Vladimir B. Bajic, Jun Kawai, Piero Carninci, 2010, PloS one.

Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses

Vladimir B. Bajic, Ahmed Moustafa, André Antunes, 2014, PloS one.

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts

Vladimir B. Bajic, Haitham Ashoor, Takashi Gojobori, 2016, Nucleic acids research.

AN ALGORITHM FOR AB-INITIO DNA MOTIF DETECTION

Vladimir B. Bajic, Rajesh Chowdhary, Enli Huang, 2005 .

DESM: portal for microbial knowledge exploration systems

Vladimir B. Bajic, Xin Gao, Robert Hoehndorf, 2015, Nucleic Acids Res..

Equations of perturbed motions and stability of state and semi-state systems

Vladimir B. Bajic, V. Bajic, 1988 .

Discriminative identification of transcriptional responses of promoters and enhancers after stimulus

Panos Kalnis, Vladimir B. Bajic, Erik Arner, 2016, Nucleic acids research.

Comparing Memory-Efficient Genome Assemblers on Stand-Alone and Cloud Infrastructures

Panos Kalnis, Vladimir B. Bajic, Dimitrios Kleftogiannis, 2013, PloS one.

Context-Specific Protein Network Miner – An Online System for Exploring Context-Specific Protein Interaction Networks from the Literature

Vladimir B. Bajic, Shreyas Karnik, Sin Lam Tan, 2012, PloS one.

Information Exploration System for Sickle Cell Disease and Repurposing of Hydroxyfasudil

Vladimir B. Bajic, Magbubah Essack, Aleksandar Radovanovic, 2013, PloS one.

Conotoxins that Confer Therapeutic Possibilities

Vladimir B. Bajic, John A. C. Archer, Magbubah Essack, 2012, Marine drugs.

Algebraic conditions for stability of linear singular systems

Vladimir B. Bajic, V. Bajic, 1991, 1991., IEEE International Sympoisum on Circuits and Systems.

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics

Vladimir B. Bajic, Sebastian Schmeier, Piero Carninci, 2015, Nucleic acids research.

Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.

Vladimir B. Bajic, André Antunes, Magbubah Essack, 2016, Gene.

dPORE-miRNA: Polymorphic Regulation of MicroRNA Genes

Vladimir B. Bajic, Sebastian Schmeier, Ulf Schaefer, 2011, PloS one.

INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles

Vladimir B. Bajic, André Antunes, Manal Kalkatawi, 2013, PloS one.

Genome Sequence of Haloplasma contractile, an Unusual Contractile Bacterium from a Deep-Sea Anoxic Brine Lake

Vladimir B. Bajic, André Antunes, Intikhab Alam, 2011, Journal of bacteriology.

Mutations and Binding Sites of Human Transcription Factors

Vladimir B. Bajic, John A. C. Archer, Ulf Schaefer, 2012, Front. Gene..

Genome Sequence of Halorhabdus tiamatea, the First Archaeon Isolated from a Deep-Sea Anoxic Brine Lake

Vladimir B. Bajic, André Antunes, Intikhab Alam, 2011, Journal of bacteriology.

A process-based model to simulate changes in tiller density and light interception of sugarcane crops

Vladimir B. Bajic, C. N. Bezuidenhout, Abraham Singels, 2003 .

BEACON: automated tool for Bacterial GEnome Annotation ComparisON

Vladimir B. Bajic, Manal Kalkatawi, Intikhab Alam, 2015, BMC Genomics.

Exploration of miRNA families for hypotheses generation

Vladimir B. Bajic, John A. C. Archer, Aleksandar Radovanovic, 2013, Scientific Reports.

Promoter Analysis Reveals Globally Differential Regulation of Human Long Non-Coding RNA and Protein-Coding Genes

Vladimir B. Bajic, Leonard Lipovich, Tanvir Alam, 2014, PloS one.

Unique Prokaryotic Consortia in Geochemically Distinct Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools

Vladimir B. Bajic, Ahmed Moustafa, Ari J. S. Ferreira, 2012, PloS one.

Genome Sequence of Salinisphaera shabanensis, a Gammaproteobacterium from the Harsh, Variable Environment of the Brine-Seawater Interface of the Shaban Deep in the Red Sea

Vladimir B. Bajic, André Antunes, Intikhab Alam, 2011, Journal of bacteriology.

Lyapunov function candidates for semi-state systems

Vladimir B. Bajic, V. Bajic, 1987 .

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera

Vladimir B. Bajic, Magbubah Essack, Gene E. Robinson, 2015, Scientific Reports.

Polymorphism : Analysis in South African Autistic Individuals

Vladimir B. Bajic, Mandeep Kaur, V. Bajic, 2010 .

Extended stability of motion of semi-state systems

Vladimir B. Bajic, Mirko M. Milić, V. Bajic, 1987 .