Heng Li

发表

Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform

Richard Durbin, Heng Li, R. Durbin, 2009 .

Tabix: fast retrieval of sequence features from generic TAB-delimited files

Heng Li, Heng Li, 2011, Bioinform..

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

Yeting Zhang, Heng Li, Eric Banks, 2018 .

A novel fuzzy rough set based long short-term memory integration model for energy consumption prediction of public buildings

Heng Li, Fengyu Zhou, Hongchang Sun, 2020 .

A haplotype-aware de novo assembly of related individuals using pedigree sequence graph

George M. Church, Heng Li, Richard Durbin, 2019, Bioinform..

TreeFam: 2008 Update

Tao Liu, Ruiqiang Li, Junjie Qin, 2007, Nucleic Acids Res..

Fast construction of FM-index for long sequence reads

Heng Li, 2014, Bioinform..

A synthetic-diploid benchmark for accurate variant-calling evaluation

Heng Li, Daniel G. MacArthur, Yossi Farjoun, 2017, Nature Methods.

Improving SNP discovery by base alignment quality

Heng Li, Heng Li, 2011, Bioinform..

HTSlib: C library for reading/writing high-throughput sequencing data

James K. Bonfield, Valeriu Ohan, Heng Li, 2020, bioRxiv.

TreeFam: a curated database of phylogenetic trees of animal gene families

Tao Liu, Ruiqiang Li, Zhang Zhang, 2005, Nucleic Acids Res..

Identifying centromeric satellites with dna-brnn

Heng Li, Heng Li, 2019, Bioinform..

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

Martin Vingron, Heng Li, David Heller, 2020, bioRxiv.

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

Yeting Zhang, Heng Li, Eric Banks, 2018, Nature Communications.

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Heng Li, Heng Li, 2015, Bioinform..

Minimap2: fast pairwise alignment for long DNA sequences

Heng Li, Heng Li, 2017 .

PigGIS: Pig Genomic Informatics System

Xin Huang, Fei Song, Heng Li, 2006, Nucleic Acids Res..

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly

Heng Li, Heng Li, 2012, Bioinform..

Haplotype-resolved de novo assembly with phased assembly graphs

Haowen Zhang, Xiaowen Feng, Heng Li, 2020, 2008.01237.

Bedtk: Finding Interval Overlap with Implicit Interval Tree

Heng Li, Jiazhen Rong, Heng Li, 2020, bioRxiv.

Fast and accurate long-read alignment with Burrows–Wheeler transform

Richard Durbin, Heng Li, R. Durbin, 2010, Bioinform..

The design and construction of reference pangenome graphs with minigraph

Chong Chu, Xiaowen Feng, Heng Li, 2020, Genome Biology.

FermiKit: assembly-based variant calling for Illumina resequencing data

Heng Li, Heng Li, 2015, Bioinform..

BFC: correcting Illumina sequencing errors

Heng Li, Heng Li, 2015, Bioinform..

A survey of sequence alignment algorithms for next-generation sequencing

Heng Li, Nils Homer, Nils Homer, 2010, Briefings Bioinform..

Minimap2: fast pairwise alignment for long nucleotide sequences

Heng Li, Heng Li, 2017 .

Toward better understanding of artifacts in variant calling from high-coverage samples

Heng Li, Heng Li, 2014, Bioinform..

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

Heng Li, Julian Parkhill, Kathryn E. Holt, 2009, Bioinform..

Bedtk: Finding Interval Overlap with Implicit Interval Tree.

Heng Li, Jiazhen Rong, 2020, Bioinformatics.

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

Heng Li, Heng Li, 2011, Bioinform..

A synthetic-diploid benchmark for accurate variant calling evaluation

Benjamin Neale, Heng Li, Yossi Farjoun, 2018, Nature Methods.

The Sequence Alignment/Map format and SAMtools

Gonçalo R. Abecasis, Richard Durbin, Heng Li, 2009, Bioinform..

BGT: efficient and flexible genotype query across many samples

Heng Li, Heng Li, 2015, Bioinform..

CRISPAltRations: a validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

Yu Wang, Heng Li, Gavin Kurgan, 2020, bioRxiv.

Ancient human genomes suggest three ancestral populations for present-day Europeans

Bonnie Berger, Swapan Mallick, Janet Kelso, 2013, Nature.

Great ape genetic diversity and population history

Arcadi Navarro, Thomas Mailund, Jaume Bertranpetit, 2013, Nature.

Extensive Regulatory Changes in Genes Affecting Vocal and Facial Anatomy Separate Modern Humans from Neanderthals and Denisovans

Swapan Mallick, Liran Carmel, Alexander Meissner, 2017 .

Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073

Ken Chen, Joshua M. Korn, Afidalina Tumian, 2010 .

Chromosome-scale, haplotype-resolved assembly of human genomes

Tobias Marschall, Andrew Carroll, Justin M Zook, 2020, Nature biotechnology.