Timothy B. Stockwell

Timothy B. Stockwell, T. Stockwell, R. Olsen, 2015, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Synthetic Generation of Influenza Vaccine Viruses for Rapid Response to Pandemics

Timothy B. Stockwell, Peter W Mason, Thomas Strecker, 2013, Science Translational Medicine.

Deep Sequencing Identifies Noncanonical Editing of Ebola and Marburg Virus RNAs in Infected Cells

Timothy B. Stockwell, T. Stockwell, M. Mahajan, 2014, mBio.

The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing

Timothy B. Stockwell, T. Stockwell, V. Puri, 2017, PloS one.

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.

Timothy B. Stockwell, Elodie Ghedin, Xudong Lin, 2011, The Journal of infectious diseases.

Quantifying influenza virus diversity and transmission in humans

Timothy B. Stockwell, T. Stockwell, R. Rosenfeld, 2016, Nature Genetics.

The effective rate of influenza reassortment is limited during human infection

Christopher J. R. Illingworth, Timothy B. Stockwell, Gavin J. D. Smith, 2017, PLoS pathogens.

Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas

Timothy B. Stockwell, Sergei L. Kosakovsky Pond, A. P. Adams, 2017, PLoS neglected tropical diseases.

Extensive Geographical Mixing of 2009 Human H1N1 Influenza A Virus in a Single University Community

Timothy B. Stockwell, Kimberly C. Brouwer, T. Stockwell, 2011, Journal of Virology.

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses

Timothy B. Stockwell, T. Stockwell, M. Heise, 2016, mSystems.

Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa.

Timothy B. Stockwell, T. Stockwell, K. Ndiaye, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in Cambodia

Timothy B. Stockwell, T. Stockwell, Huachen Zhu, 2016, Emerging Microbes & Infections.

Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States

Timothy B. Stockwell, T. Stockwell, T. Lam, 2015, Journal of Virology.

VariantClassifier: A hierarchical variant classifier for annotated genomes

Timothy B. Stockwell, Kelvin Li, T. Stockwell, 2010, BMC Research Notes.

Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B

Timothy B. Stockwell, T. Stockwell, K. Spurgers, 2019, Scientific Reports.

Genomic and Protein Structural Maps of Adaptive Evolution of Human Influenza A Virus to Increased Virulence in the Mouse

Timothy B. Stockwell, Samar K Dankar, T. Stockwell, 2011, PloS one.

Genetic stability of foot-and-mouth disease virus during long-term infections in natural hosts

Timothy B. Stockwell, T. Stockwell, Reed S Shabman, 2018, PloS one.

Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam

Timothy B. Stockwell, Hoang Minh Tu Van, T. Stockwell, 2015, Journal of Virology.

The contrasting phylodynamics of human influenza B viruses

Timothy B. Stockwell, Gavin J. D. Smith, T. Stockwell, 2015, eLife.

Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus

Timothy B. Stockwell, T. Stockwell, S. Schultz-Cherry, 2016, Journal of Virology.

Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome

Timothy B. Stockwell, D. G. Gibson, T. Stockwell, 2008, Science.

Characterization of Uncultivable Bat Influenza Virus Using a Replicative Synthetic Virus

Timothy B. Stockwell, T. Stockwell, Bin Zhou, 2014, PLoS pathogens.

Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012–2013

Timothy B. Stockwell, T. Stockwell, K. Schmader, 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Despite egg-adaptive mutations, the 2012-13 H3N2 influenza vaccine induced comparable antibody titers to the intended strain

Timothy B. Stockwell, T. Stockwell, K. Schmader, 2017, bioRxiv.

Genomic reassortment of influenza A virus in North American swine, 1998-2011.

Timothy B. Stockwell, E. Holmes, A. Vincent, 2012, The Journal of general virology.

A draft genome sequence for the Ixodes scapularis cell line, ISE6

Timothy B. Stockwell, S. Koren, G. Sutton, 2018, F1000Research.

Analysis of Recombinant H7N9 Wild-Type and Mutant Viruses in Pigs Shows that the Q226L Mutation in HA Is Important for Transmission

Timothy B. Stockwell, T. Stockwell, R. Webby, 2014, Journal of Virology.

Universal Influenza B Virus Genomic Amplification Facilitates Sequencing, Diagnostics, and Reverse Genetics

Timothy B. Stockwell, T. Stockwell, I. Barr, 2014, Journal of Clinical Microbiology.

Spread and Persistence of Influenza A Viruses in Waterfowl Hosts in the North American Mississippi Migratory Flyway

Timothy B. Stockwell, T. Stockwell, A. Bowman, 2015, Journal of Virology.

Influenza A Virus Migration and Persistence in North American Wild Birds

Timothy B. Stockwell, Gavin J. D. Smith, T. Stockwell, 2013, PLoS pathogens.

Synthetic Generation of Influenza Vaccine Viruses for Rapid Response to Pandemics

Timothy B. Stockwell, D. G. Gibson, J. Glass, 2013, Science Translational Medicine.

Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification

Timothy B. Stockwell, Gavin J. D. Smith, Rob Lambkin-Williams, 2016, Journal of Virology.

SISPA-Seq for rapid whole genome surveys of bacterial isolates.

Timothy B. Stockwell, M. Adams, T. Stockwell, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Evaluation of next generation sequencing platforms for population targeted sequencing studies

Timothy B. Stockwell, S. Levy, P. Ng, 2009, Genome Biology.

Large-Scale Complete-Genome Sequencing and Phylodynamic Analysis of Eastern Equine Encephalitis Virus Reveals Source-Sink Transmission Dynamics in the United States

Timothy B. Stockwell, T. Lam, R. Tesh, 2018, Journal of Virology.

Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene

Timothy B. Stockwell, T. Stockwell, V. Puri, 2016, Scientific Reports.

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential

Eric J. Ma, Timothy B. Stockwell, Gavin J. D. Smith, 2016, PLoS pathogens.

Phylogeography of Influenza A(H3N2) Virus in Peru, 2010–2012

Timothy B. Stockwell, T. Stockwell, E. Holmes, 2015, Emerging infectious diseases.

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Timothy B. Stockwell, T. Stockwell, R. Webster, 2015, Emerging Microbes & Infections.

The evolutionary dynamics of influenza A and B viruses in the tropical city of Managua, Nicaragua.

Timothy B. Stockwell, T. Stockwell, E. Harris, 2014, Virology.

Whole genome analyses of G1P[8] rotavirus strains from vaccinated and non‐vaccinated South African children presenting with diarrhea

Timothy B. Stockwell, T. Stockwell, R. Halpin, 2015, Journal of Medical Virology.

Evaluation of phenotypic markers in full genome sequences of avian influenza isolates from California.

Timothy B. Stockwell, L. L. Lindsay, W. Boyce, 2013, Comparative immunology, microbiology and infectious diseases.

TransmissionMutation in HA Is Important for and Mutant Viruses in Pigs Shows that the Analysis of Recombinant H7N9 Wild-Type

Timothy B. Stockwell, T. Stockwell, R. Webby, 2014 .

Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells

Timothy B. Stockwell, S. Quake, A. Halpern, 2007, PLoS genetics.

The early diversification of influenza A/H1N1pdm

Timothy B. Stockwell, T. Stockwell, C. Viboud, 2009, PLoS currents.

North Atlantic Migratory Bird Flyways Provide Routes for Intercontinental Movement of Avian Influenza Viruses

Jeffrey S. Hall, Timothy B. Stockwell, T. Stockwell, 2014, PloS one.

Cloning, Assembly, and Modification of the Primary Human Cytomegalovirus Isolate Toledo by Yeast-Based Transformation-Associated Recombination

Timothy B. Stockwell, D. G. Gibson, T. Stockwell, 2017, mSphere.

Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans

Timothy B. Stockwell, Gavin J. D. Smith, Y. Guan, 2011, Proceedings of the National Academy of Sciences.

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds.

Timothy B. Stockwell, T. Stockwell, T. Lam, 2012, Ecology letters.

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability

Jeffrey S. Hall, Timothy B. Stockwell, T. Stockwell, 2013, Virology Journal.

Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens

Timothy B. Stockwell, T. Stockwell, D. Seto, 2018, Emerging Microbes & Infections.

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses

Timothy B. Stockwell, Uma S. Kamaraj, T. Stockwell, 2017, Journal of Clinical Microbiology.

Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock

Timothy B. Stockwell, V. Puri, B. Pickett, 2017, Genome Announcements.

Isolation and Characterization of a Novel Gammaherpesvirus from a Microbat Cell Line

Timothy B. Stockwell, T. Stockwell, R. Sachidanandam, 2016, mSphere.

First Complete Genome Sequences of Two Keystone Viruses from Florida

Timothy B. Stockwell, T. Stockwell, L. Kramer, 2015, Genome Announcements.

Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data

Timothy B. Stockwell, Gavin J. D. Smith, T. Stockwell, 2015, The Journal of general virology.

Complete Genomic Sequence for an Avian Group G Rotavirus from South Africa

Timothy B. Stockwell, T. Stockwell, R. Halpin, 2015, Genome Announcements.

Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa

Timothy B. Stockwell, Sunando Roy, R. Halpin, 2014, Virus Genes.

Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus

Timothy B. Stockwell, T. Stockwell, E. Holmes, 2013, Journal of Virology.

Genomic analysis of a large set of currentlyâ€”and historicallyâ€”important human adenovirus pathogens

Timothy B. Stockwell, R. Madupu, J. Malathi, 2018 .

Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing

Timothy B. Stockwell, R. Baric, Kelvin Li, 2010, PLoS pathogens.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

Timothy B. Stockwell, S. Koren, N. Bergman, 2017, bioRxiv.

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

Timothy B. Stockwell, Roger S Lasken, T. Stockwell, 2007, BMC biotechnology.

H19 influenza A virus exhibits species-specific MHC class II receptor usage.

Timothy B. Stockwell, S. Stertz, F. Krammer, 2024, Cell host & microbe.

A host subtraction database for virus discovery in human cell line sequencing data

Timothy B. Stockwell, G. Sutton, T. Stockwell, 2018, F1000Research.

A host subtraction database for virus discovery in human cell line sequencing data [version 2; peer review: 1 approved, 1 approved with reservations]

Timothy B. Stockwell, G. Sutton, C. Friedel, 2021 .