Fedor V. Karginov

发表

Site identification in high-throughput RNA-protein interaction data

Andrew D. Smith, Mei Qiao, Emad Bahrami Samani, 2012, Bioinform..

The CRISPR system: small RNA-guided defense in bacteria and archaea.

Fedor V. Karginov, G. Hannon, 2010, Molecular cell.

The miR-17∼92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma

Fedor V. Karginov, M. Roussel, Lin He, 2009, Proceedings of the National Academy of Sciences.

Global Approaches in Studying RNA-Binding Protein Interaction Networks.

Fedor V. Karginov, Erin L. Sternburg, 2020, Trends in biochemical sciences.

Remodeling of Ago2-mRNA interactions upon cellular stress reflects miRNA complementarity and correlates with altered translation rates.

Fedor V. Karginov, G. Hannon, 2013, Genes & development.

Antagonistic and cooperative AGO2-PUM interactions in regulating mRNAs

Fedor V. Karginov, Erin L. Sternburg, J. Estep, 2018, Scientific Reports.

Transcriptome-wide Identification and Validation of Interactions between the miRNA Machinery and HuR on mRNA Targets.

Fedor V. Karginov, J. Estep, Yahui Li, 2017, Journal of molecular biology.

Measuring mRNA Translation by Polysome Profiling.

Fedor V. Karginov, M. Kudła, 2016, Methods in molecular biology.

A biochemical approach to identifying microRNA targets

Zhenyu Xuan, Gail Mandel, Gregory J. Hannon, 2007, Proceedings of the National Academy of Sciences.

Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.

Gregory J. Hannon, Fedor V. Karginov, Alexander Stark, 2010, Molecular cell.

Mammalian pumilio proteins control cellular morphology, migration, and adhesion

Fedor V. Karginov, Erin L. Sternburg, Rattapol Phandthong, 2022, bioRxiv.

Defining and Exploiting Hypersensitivity Hotspots to Facilitate Abscisic Acid Agonist Optimization.

Fedor V. Karginov, S. Cutler, S. Wendeborn, 2019, ACS chemical biology.

Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells

Fedor V. Karginov, P. Hertzog, K. Jeffrey, 2016, Nature Microbiology.

RNA biology in a test tube—an overview of in vitro systems/assays

Fedor V. Karginov, X. Roca, Xavier Roca, 2012, Wiley interdisciplinary reviews. RNA.

Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme.

Fedor V. Karginov, O. Uhlenbeck, 2004, Nucleic acids research.

The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.

Fedor V. Karginov, O. Uhlenbeck, K. Kossen, 2002, Journal of molecular biology.

miRNA complementarity and correlates with altered translation rates mRNA interactions upon cellular stress reflects − Remodeling of Ago 2 Material

Fedor V. Karginov, G. Hannon, 2013 .

Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs.

Fedor V. Karginov, G. Hannon, Yaniv Erlich, 2009, Genes & development.

Immunoblot screening of CRISPR/Cas9-mediated gene knockouts without selection

Fedor V. Karginov, Erin L. Sternburg, J. Estep, 2016, BMC Molecular Biology.

Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of Aedes aegypti

Fedor V. Karginov, T. Girke, A. Raikhel, 2017, Proceedings of the National Academy of Sciences.

Developmentally regulated cleavage of tRNAs in the bacterium Streptomyces coelicolor

Fedor V. Karginov, G. Hannon, Henry J. Haiser, 2007, Nucleic acids research.

Selection-dependent and Independent Generation of CRISPR/Cas9-mediated Gene Knockouts in Mammalian Cells.

Fedor V. Karginov, Erin L. Sternburg, Kristen C Dias, 2017, Journal of visualized experiments : JoVE.

Analysis of RBP Regulation and Co-regulation of mRNA 3' UTR Regions in a Luciferase Reporter System.

Fedor V. Karginov, Erin L. Sternburg, 2021, Methods in molecular biology.

Antagonistic and cooperative AGO2-PUM interactions in regulating mRNAs

Fedor V. Karginov, Erin L. Sternburg, J. Estep, 2018, Scientific Reports.

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold.

Fedor V. Karginov, O. Uhlenbeck, M. Overgaard, 2006, RNA.

YxiN Is a Modular Protein Combining a DExD/H Core and a Specific RNA-binding Domain*

Fedor V. Karginov, O. Uhlenbeck, D. Mckay, 2005, Journal of Biological Chemistry.

HuR controls apoptosis and activation response without effects on cytokine 3’ UTRs

Fedor V. Karginov, 2019, RNA biology.

The miR-17∼92 cluster collaborates with the Sonic Hedgehog pathway in medulloblastoma

Fedor V. Karginov, M. Roussel, Lin He, 2009, Proceedings of the National Academy of Sciences.

Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.

Fedor V. Karginov, G. Hannon, Sihem Cheloufi, 2010, Molecular cell.

Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells

Fedor V. Karginov, P. Hertzog, K. Jeffrey, 2016, Nature Microbiology.