Marek Palkowski

Marek Palkowski, Wlodzimierz Bielecki, Tomasz Klimek, 2016, 2016 International Symposium on Computer Architecture and High Performance Computing Workshops (SBAC-PADW).

Perfectly Nested Loop Tiling Transformations Based on the Transitive Closure of the Program Dependence Graph

Marek Palkowski, Wlodzimierz Bielecki, W. Bielecki, 2014, ACS.

Parallel Code Generation for Mobile Devices

Marek Palkowski, M. Pałkowski, 2015 .

Energy Consumption Analysis of the Nussinov RNA Folding Implementations

Marek Palkowski, M. Pałkowski, 2019, ICAISC.

TRACO: An automatic loop nest parallelizer for numerical applications

Marek Palkowski, Wlodzimierz Bielecki, Tomasz Klimek, 2015, 2015 Federated Conference on Computer Science and Information Systems (FedCSIS).

Using Free Scheduling for Programming Graphic Cards

Marek Palkowski, Wlodzimierz Bielecki, 2011, Facing the Multicore-Challenge.

Coarse-Grained Loop Parallelization: Iteration Space Slicing vs Affine Transformations

Albert Cohen, Anna Beletska, Marek Palkowski, 2009, 2009 Eighth International Symposium on Parallel and Distributed Computing.

TRACO Parallelizing Compiler

Marek Palkowski, Wlodzimierz Bielecki, W. Bielecki, 2014, ACS.

Usage of the TRACO Compiler for Neural Network Parallelization

Marek Palkowski, Wlodzimierz Bielecki, W. Bielecki, 2014, ICAISC.

TRACO: Source-to-Source Parallelizing Compiler

Marek Palkowski, Wlodzimierz Bielecki, 2016, Comput. Informatics.

Parallel Cache Efficient Algorithm and Implementation of Needleman-Wunsch Global Sequence Alignment

Marek Palkowski, Wlodzimierz Bielecki, Krzysztof Siedlecki, 2018, ICAISC.

A Practical Approach to Tiling Zuker's RNA Folding Using the Transitive Closure of Loop Dependence Graphs

Marek Palkowski, Wlodzimierz Bielecki, 2017, ISAT.

Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding

Marek Palkowski, Wlodzimierz Bielecki, Mateusz Gruzewski, 2020, ICAISC.

Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing

Marek Palkowski, Wlodzimierz Bielecki, 2017, BMC Bioinformatics.

Finding Synchronization-Free Parallelism Represented with Trees of Dependent Operations

Pierluigi San Pietro, Anna Beletska, Marek Palkowski, 2008, ICA3PP.

Coarse-Grained Loop Parallelization: Iteration Space Slicing vs Affine Transformations

Albert Cohen, Anna Beletska, Marek Palkowski, 2009, ISPDC.

Programming NVIDIA cards by means of transitive closure based parallelization algorithms

Marek Palkowski, Wlodzimierz Bielecki, W. Bielecki, 2012 .

Tuning iteration space slicing based tiled multi-core code implementing Nussinov’s RNA folding

Marek Palkowski, Wlodzimierz Bielecki, 2018, BMC Bioinformatics.

An iteration space visualizer for polyhedral loop transformations in numerical programming

Marek Palkowski, Wlodzimierz Bielecki, W. Bielecki, 2016, 2016 Federated Conference on Computer Science and Information Systems (FedCSIS).

Generation of parallel synchronization-free tiled code

Marek Palkowski, Wlodzimierz Bielecki, Piotr Skotnicki, 2018, Computing.

Parallel cache-efficient code for computing the McCaskill partition functions

Marek Palkowski, Wlodzimierz Bielecki, 2019, 2019 Federated Conference on Computer Science and Information Systems (FedCSIS).

Improving Data Locality of RNA Secondary Structure Prediction Code

Marek Palkowski, Wlodzimierz Bielecki, Piotr Skotnicki, 2017, ICAISC.

Tiling Nussinov’s RNA folding loop nest with a space-time approach

Marek Palkowski, Wlodzimierz Bielecki, 2019, BMC Bioinformatics.

Using Message Passing for Developing Coarse-Grained Applications in OpenMP

Marek Palkowski, Wlodzimierz Bielecki, 2008, ICSOFT.

Impact of Variable Privatization on Extracting Synchronization-Free Slices for Multi-core Computers

Marek Palkowski, M. Pałkowski, 2012, Facing the Multicore-Challenge.

Accelerating Minimum Cost Polygon Triangulation Code with the TRACO Compiler

Marek Palkowski, Wlodzimierz Bielecki, 2018, FedCSIS.

Free Scheduling of Tiles Based on the Transitive Closure of Dependence Graphs

Marek Palkowski, Wlodzimierz Bielecki, Tomasz Klimek, 2015, PPAM.

Optimizing numerical code by means of the transitive closure of dependence graphs

Marek Palkowski, Wlodzimierz Bielecki, 2017, 2017 Federated Conference on Computer Science and Information Systems (FedCSIS).

An Iterative Algorithm of Computing the Transitive Closure of a Union of Parametrized Affine Integer Tuple Relations

Anna Beletska, Marek Palkowski, Wlodzimierz Bielecki, 2012, Discret. Math. Algorithms Appl..

Using an Artificial Neural Network to Predict Loop Transformation Time

Marek Palkowski, Wlodzimierz Bielecki, 2015, ICAISC.

Transitive Closure Based Schedule of Loop Nest Statement Instances

Marek Palkowski, Wlodzimierz Bielecki, 2018, ACS.

Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences

Marek Palkowski, Wlodzimierz Bielecki, 2018, J. Comput. Biol..

Implementation of Nussinov's RNA Folding Using the Kokkos Library

Marek Palkowski, Mateusz Gruzewski, 2021, CORES/IP&C/ACS.

RNA Folding Codes Optimization Using the Intel SDK for OpenCL

Marek Palkowski, Mateusz Gruzewski, 2021, ICAISC.