Aleksandr B. Sahakyan

发表

ALMOST: An all atom molecular simulation toolkit for protein structure determination

Carlo Camilloni, Michele Vendruscolo, Andrea Cavalli, 2014, J. Comput. Chem..

Selective Chemical Labeling of Natural T Modifications in DNA

Aleksandr B. Sahakyan, S. Balasubramanian, Robyn E. Hardisty, 2015, Journal of the American Chemical Society.

Protein structure validation using side-chain chemical shifts.

Aleksandr B. Sahakyan, A. Cavalli, M. Vendruscolo, 2012, The journal of physical chemistry. B.

Extending the boundaries of the usage of NMR chemical shifts in deciphering biomolecular structure and dynamics

Aleksandr B. Sahakyan, 2012 .

Assessment of solvent effects: do weak alignment media affect the structure of the solute?

Aleksandr B. Sahakyan, A. Gronenborn, I. Byeon, 2007, Magnetic resonance in chemistry : MRC.

Core variability in substitution rates and the basal sequence characteristics of the human genome

Aleksandr B. Sahakyan, S. Balasubramanian, 2015, bioRxiv.

Machine learning model for sequence-driven DNA G-quadruplex formation

Giovanni Marsico, Shankar Balasubramanian, Aleksandr B. Sahakyan, 2017, Scientific Reports.

Cyclophilin A catalyzes proline isomerization by an electrostatic handle mechanism

Carlo Camilloni, Michele Vendruscolo, Fengli Zhang, 2014, Proceedings of the National Academy of Sciences.

A conformational ensemble derived using NMR methyl chemical shifts reveals a mechanical clamping transition that gates the binding of the HU protein to DNA.

Carlo Camilloni, Michele Vendruscolo, Andrea Cavalli, 2014, Journal of the American Chemical Society.

Single genome retrieval of context-dependent variability in mutation rates for human germline

Aleksandr B. Sahakyan, S. Balasubramanian, 2017, BMC Genomics.

Core variability in mutation rates shape the basal sequence characteristics of the human genome

Aleksandr B. Sahakyan, S. Balasubramanian, 2015 .

Dielectric permittivity and temperature effects on spin–spin couplings studied on acetonitrile

Aleksandr B. Sahakyan, A. A. Shahkhatuni, A. Shahkhatuni, 2008, Magnetic resonance in chemistry : MRC.

Torsion sensitivity in NMR of aligned molecules: study on various substituted biphenyls

Aleksandr B. Sahakyan, A. A. Shahkhatuni, A. Shahkhatuni, 2008, Magnetic resonance in chemistry : MRC.

Revealing the specific solute–solvent interactions via the measurements of the NMR spin–spin coupling constants

Aleksandr B. Sahakyan, A. A. Shahkhatuni, A. Shahkhatuni, 2015 .

A Spontaneous Ring‐Opening Reaction Leads to a Repair‐Resistant Thymine Oxidation Product in Genomic DNA

Aleksandr B. Sahakyan, S. Balasubramanian, F. Kawasaki, 2019, Chembiochem : a European journal of chemical biology.

Structural analysis reveals the formation and role of RNA G-quadruplex structures in human mature microRNAs.

Aleksandr B. Sahakyan, C. Kwok, Chun Chan, 2018, Chemical communications.

Structure-based prediction of methyl chemical shifts in proteins

Aleksandr B. Sahakyan, A. Cavalli, M. Vendruscolo, 2011, Journal of biomolecular NMR.

Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning

Aleksandr B. Sahakyan, A. Abdullah, Kairi Masuda, 2023, bioRxiv.

Machine learning model for sequence-driven DNA G-quadruplex formation

Aleksandr B. Sahakyan, S. Balasubramanian, Giovanni Marsico, 2017, Scientific Reports.

rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome

Giovanni Marsico, Chun Kit Kwok, Shankar Balasubramanian, 2016, Nature Methods.

Structure-driven effects on genomic DNA damage propensity at G-quadruplex sites

Aleksandr B. Sahakyan, A. Abdullah, Claudia Feng, 2021, bioRxiv.

Whole genome experimental maps of DNA G-quadruplexes in multiple species

Giovanni Marsico, Shankar Balasubramanian, Aleksandr B. Sahakyan, 2019, Nucleic acids research.

Long genes and genes with multiple splice variants are enriched in pathways linked to cancer and other multigenic diseases

Aleksandr B. Sahakyan, S. Balasubramanian, 2016, BMC Genomics.

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

Aleksandr B. Sahakyan, S. Balasubramanian, Clemens Mayer, 2017, Nature Structural &Molecular Biology.

Electric field effects on one-bond indirect spin-spin coupling constants and possible biomolecular perspectives.

Aleksandr B. Sahakyan, H. Panosyan, Astghik A Shahkhatuni, 2008, The journal of physical chemistry. A.

Computational studies of dielectric permittivity effects on chemical shifts of alanine dipeptide

Aleksandr B. Sahakyan, 2012 .

Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data.

Aleksandr B. Sahakyan, H. Ju, J. Mergny, 2021, Angewandte Chemie.

Analysis of the contributions of ring current and electric field effects to the chemical shifts of RNA bases.

Michele Vendruscolo, Aleksandr B. Sahakyan, M. Vendruscolo, 2013, The journal of physical chemistry. B.

Generalised interrelations among mutation rates drive the genomic compliance of Chargaff’s second parity rule

Aleksandr B. Sahakyan, Patrick Pflughaupt, 2022, bioRxiv.

A geometrical parametrization of C1'-C5' RNA ribose chemical shifts calculated by density functional theory.

Aleksandr B. Sahakyan, M. Vendruscolo, R. Suardíaz, 2013, The Journal of chemical physics.

Using side-chain aromatic proton chemical shifts for a quantitative analysis of protein structures.

Aleksandr B. Sahakyan, A. Cavalli, M. Vendruscolo, 2011, Angewandte Chemie.

Structural Analysis using SHALiPE to Reveal RNA G‐Quadruplex Formation in Human Precursor MicroRNA

Aleksandr B. Sahakyan, S. Balasubramanian, C. Kwok, 2016, Angewandte Chemie.

Analysis of the contributions of ring current and electric field effects to the chemical shifts of RNA bases.

Aleksandr B. Sahakyan, M. Vendruscolo, 2013, The journal of physical chemistry. B.