Yiannis N. Kaznessis

发表

On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure

Michail Vlysidis, Yiannis N. Kaznessis, Y. Kaznessis, 2018, Entropy.

Prediction of blood-brain partitioning using Monte Carlo simulations of molecules in water

Yiannis N. Kaznessis, Mark E. Snow, C. John Blankley, 2001, J. Comput. Aided Mol. Des..

A linearization method for probability moment equations

Michail Vlysidis, Yiannis N. Kaznessis, Y. Kaznessis, 2018, Comput. Chem. Eng..

How to Build Kinetic Models of BioBricks

Vassilios Sotiropoulos, Yiannis N. Kaznessis, Emma Weeding, 2009 .

Numerical simulation of stochastic gene circuits

Howard M. Salis, Yiannis N. Kaznessis, H. Salis, 2005, Comput. Chem. Eng..

Models for synthetic biology

Yiannis N. Kaznessis, Y. Kaznessis, 2007, BMC Systems Biology.

Statistical Thermodynamics and Stochastic Kinetics: Molecular dynamics simulations

Yiannis N. Kaznessis, 2011 .

A Quantitative Analysis of Interfacial Amino Acid Conservation in Protein-protein Hetero Complexes

Yiannis N. Kaznessis, Boojala V. B. Reddy, 2005, J. Bioinform. Comput. Biol..

Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore

Yiannis N. Kaznessis, Abdallah Sayyed-Ahmad, Dan S. Bolintineanu, 2009, PLoS Comput. Biol..

SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs

Yiannis N. Kaznessis, Jason Houle, Emma M. B. Weeding, 2010, Briefings Bioinform..

Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes

Vassilios Sotiropoulos, Yiannis N. Kaznessis, Y. Kaznessis, 2007, BMC Systems Biology.

Residue Conservation Information for Generating near-native Structures in Protein-protein Docking

Yiannis N. Kaznessis, Boojala V. B. Reddy, Yuhua Duan, 2006, J. Bioinform. Comput. Biol..

Solving Stochastic Reaction Networks with Maximum Entropy Lagrange Multipliers

Michail Vlysidis, Yiannis N. Kaznessis, Y. Kaznessis, 2018, Entropy.

SynBioSS: the synthetic biology modeling suite

Vassilios Sotiropoulos, Yiannis N. Kaznessis, Anthony D. Hill, 2008, Bioinform..

Stochastic simulations of the tetracycline operon

Prodromos Daoutidis, Yiannis N. Kaznessis, Konstantinos Biliouris, 2011, BMC Systems Biology.

Multi-scale models for gene network engineering

Yiannis N. Kaznessis, Y. Kaznessis, 2006 .

Model Reduction of Multiscale Chemical Langevin Equations: A Numerical Case Study

Prodromos Daoutidis, Vassilios Sotiropoulos, Yiannis N. Kaznessis, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Multiscale models for synthetic biology

Vassilios Sotiropoulos, Yiannis N. Kaznessis, Anthony D. Hill, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Stochastic simulations of a synthetic bacteria-yeast ecosystem

Claudia Schmidt-Dannert, David Babson, Yiannis N. Kaznessis, 2012, BMC Systems Biology.

Model reduction of multi-scale chemical Langevin equations

Prodromos Daoutidis, Vassilios Sotiropoulos, Yiannis N. Kaznessis, 2011, Syst. Control. Lett..

Multiscale Hy3S: Hybrid stochastic simulation for supercomputers

Vassilios Sotiropoulos, Howard M. Salis, Yiannis N. Kaznessis, 2006, BMC Bioinformatics.

A Review of Methods for Computational Prediction of Blood-Brain Partitioning

Yiannis N. Kaznessis, Y. Kaznessis, 2005 .

Correlation between simulated physicochemical properties and hemolycity of protegrin-like antimicrobial peptides: Predicting experimental toxicity

Yiannis N. Kaznessis, Allison A. Langham, Himanshu Khandelia, 2008, Peptides.

Convergent Transcription in the Butyrolactone Regulon in Streptomyces coelicolor Confers a Bistable Genetic Switch for Antibiotic Biosynthesis

Wei-Shou Hu, Eriko Takano, Yiannis N. Kaznessis, 2011, PloS one.

An equation-free probabilistic steady state approximation: Dynamic application to the stochastic simulation of chemically reacting systems

Howard M. Salis, Yiannis N. Kaznessis, 2005 .

Modified Lactic Acid Bacteria Detect and Inhibit Multiresistant Enterococci

Yiannis N. Kaznessis, Gary M. Dunny, Y. Kaznessis, 2014, ACS synthetic biology.

A closure scheme for chemical master equations

Yiannis N. Kaznessis, Patrick Smadbeck, Y. Kaznessis, 2013, Proceedings of the National Academy of Sciences.

Statistical Thermodynamics and Stochastic Kinetics: An Introduction for Engineers

Yiannis N. Kaznessis, Y. Kaznessis, 2012 .