Yonit Halperin

Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences

Ron Shamir, Chaim Linhart, Igor Ulitsky, 2010, RECOMB.

Functional genomic delineation of TLR-induced transcriptional networks

Ron Shamir, Ran Elkon, Chaim Linhart, 2007, BMC Genomics.

Allegro: Analyzing expression and sequence in concert to discover regulatory programs

Ron Shamir, Chaim Linhart, Igor Ulitsky, 2009, Nucleic acids research.