Adair L. Borges

发表

Machine-learning approach expands the repertoire of anti-CRISPR protein families

Kira S. Makarova, Eugene V. Koonin, Yuri I. Wolf, 2020, Nature Communications.

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

Natalia N. Ivanova, Adair L. Borges, A. Visel, 2019, Nature Microbiology.

Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes

Natalia N. Ivanova, Adair L. Borges, A. Visel, 2019, bioRxiv.

The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.

Alan R Davidson, Adair L. Borges, Joseph Bondy-Denomy, 2017, Annual review of virology.

Discovery of widespread type I and type V CRISPR-Cas inhibitors

J. Keith Joung, Benjamin P. Kleinstiver, Alexander A. Sousa, 2018, Science.

Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2022, Journal of bacteriology.

Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity

Adair L. Borges, B. Wiedenheft, J. Bondy-Denomy, 2018, Cell.

Hammondia hammondi Harbors Functional Orthologs of the Host-Modulating Effectors GRA15 and ROP16 but Is Distinguished from Toxoplasma gondii by a Unique Transcriptional Profile

Adair L. Borges, Katelyn A Walzer, J. Boyle, 2014, Eukaryotic Cell.

A Type IV-A CRISPR-Cas System in Pseudomonas aeruginosa Mediates RNA-Guided Plasmid Interference In Vivo.

Adair L. Borges, J. Bondy-Denomy, R. N. Jackson, 2019, The CRISPR journal.

Experimental validation that human microbiome phages use alternative genetic coding

Adair L. Borges, J. Banfield, R. Hettich, 2022, Nature Communications.

Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes

Adair L. Borges, Petar I. Penev, J. Banfield, 2022, Nature Microbiology.

How to train your bacteriophage

Adair L. Borges, 2021, Proceedings of the National Academy of Sciences.

Differential Locus Expansion Distinguishes Toxoplasmatinae Species and Closely Related Strains of Toxoplasma gondii

Adair L. Borges, J. Boyle, Hannah E. Wand, 2014, mBio.

Stop codon recoding is widespread in diverse phage lineages and has the potential to regulate translation of late stage and lytic genes

Adair L. Borges, J. Banfield, B. Al-Shayeb, 2021, bioRxiv.

Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication

Adair L. Borges, Petar I. Penev, J. Banfield, 2021, ISME Communications.

Species- and site-specific genome editing in complex bacterial communities

Benjamin E. Rubin, Adair L. Borges, J. Banfield, 2021, Nature Microbiology.

Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity

Adair L. Borges, B. Wiedenheft, J. Bondy-Denomy, 2018, Cell.

Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa

Allyson E. Park, Adair L. Borges, J. Bondy-Denomy, 2020, bioRxiv.

Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription

Adair L. Borges, N. Krogan, A. Davidson, 2019, Cell.

Adair L. Borges, J. Banfield, N. Segata, 2021, iScience.

Genomic analysis of cultivated infant microbiomes identifies Bifidobacterium 2’-fucosyllactose utilization can be facilitated by co-existing species

Benjamin E. Rubin, Adair L. Borges, J. Banfield, 2023, bioRxiv.

Bacteriophage Cooperation Suppresses CRISPR-Cas 3 and Cas 9 Immunity Graphical

Adair L. Borges, B. Wiedenheft, J. Bondy-Denomy, 2018 .

Bacterial alginate regulators and phage homologs repress CRISPR–Cas immunity

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2020, Nature Microbiology.

Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2020, Journal of bacteriology.

Species- and site-specific genome editing in complex bacterial communities

Benjamin E. Rubin, Adair L. Borges, J. Banfield, 2021, Nature Microbiology.

Wide distribution of alternatively coded Lak megaphages in animal microbiomes

Adair L. Borges, J. Banfield, N. Segata, 2021, bioRxiv.

Identification of an anti-CRISPR protein that inhibits the CRISPR-Cas type I-B system in Clostridioides difficile

Adair L. Borges, K. Severinov, J. Andreani, 2023, bioRxiv.

Direct observation of genome surveillance by CRISPR-Cas in bacteria

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2020, bioRxiv.

Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2020, Nature Microbiology.

CRISPR-Cas immunity repressed by a biofilm-activating pathway in Pseudomonas aeruginosa

Adair L. Borges, J. Bondy-Denomy, S. Govindarajan, 2019, bioRxiv.

Infant gut bacteriophage strain persistence during the first three years of life

Adair L. Borges, J. Banfield, B. Firek, 2023, bioRxiv.

Validation that human microbiome phages use alternative genetic coding with TAG stop read as Q

Adair L. Borges, J. Banfield, R. Hettich, 2022, bioRxiv.

AcrIF11 is a potent CRISPR-specific ADP-ribosyltransferase encoded by phage and plasmid

Adair L. Borges, Morgan E. Diolaiti, G. J. Correy, 2024, bioRxiv.

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species

Adair L. Borges, J. Banfield, J. Doudna, 2023, Nature communications.