Francois Balloux

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Modelling microbiome recovery after antibiotics using a 1 stability landscape framework 2 Running title : Modelling microbiome recovery after antibiotics 3

Chris P. Barnes, Liam P. Shaw, Hassan Bassam, 2019 .

Hepatitis B virus mutations involved in clinical outcome

Richard A. Nichols, Camille Szmaragd, Andrea Manica, 2006 .

STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies

Andre Charlett, Sofia Morfopoulou, Denise M O'Sullivan, 2020, The Lancet Infectious Diseases.

Inclusive fitness theory and eusociality

Laurent Lehmann, James A. R. Marshall, Hanna Kokko, 2011, Nature.

An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia

Yong Wang, Ole Lund, Søren Brunak, 2011, Science.

Phylogenetic diversity and historical patterns of pandemic spread of Yersinia pestis

Giovanna Morelli, Thibaut Jombart, Paul Keim, 2010, Nature Genetics.

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

Mattias Jakobsson, Søren Brunak, Omar E. Cornejo, 2014, Nature.

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

Julian Parkhill, Vanya Gant, Zhemin Zhou, 2013, Genome research.

Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic

Thibaut Jombart, Rosalind M Eggo, Francois Balloux, 2009, PLoS currents.

Genomic evidence for the Pleistocene and recent population history of Native Americans

Mattias Jakobsson, Kelley Harris, Omar E. Cornejo, 2015, Science.

Armed conflict and population displacement as drivers of the evolution and dispersal of Mycobacterium tuberculosis

Andrew Kitchen, Erik Michael Rasmussen, Troels Lillebaek, 2016, Proceedings of the National Academy of Sciences.