Chad L. Myers

发表

Major functional bias for mitochondrial complexes in genome-wide CRISPR screens

Mahfuzur Rahman, Maximilian Billmann, Michael Costanzo, 2020, bioRxiv.

Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis

Kai Li, Olga G. Troyanskaya, Curtis Huttenhower, 2009, PLoS Comput. Biol..

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction

Olga G. Troyanskaya, Curtis Huttenhower, David C. Hess, 2009, Bioinform..

Experimental validation of bioPIXIE prediction for the biological role of YPL017C

Kara Dolinski, Olga G. Troyanskaya, Chad L. Myers, 2011 .

Improving prediction of compound function from chemical structure using chemical-genetic networks

Justin Nelson, Chad L. Myers, Hamid Safizadeh, 2017, bioRxiv.

Exploring the functional landscape of gene expression: directed search of large microarray compendia

Kai Li, Olga G. Troyanskaya, Curtis Huttenhower, 2007, Bioinform..

Visualization-based discovery and analysis of genomic aberrations in microarray data

Xing Chen, Olga G. Troyanskaya, Chad L. Myers, 2005, BMC Bioinformatics.

Cross-weighted Fisher discriminant analysis for visualization of DNA microarray data

Sun-Yuan Kung, Xinying Zhang, Chad L. Myers, 2004, 2004 IEEE International Conference on Acoustics, Speech, and Signal Processing.

Protein Complexes are Central in the Yeast Genetic Landscape

Gary D. Bader, Gary D Bader, Michael Costanzo, 2011, PLoS Comput. Biol..

Data from: Systematic analysis of complex genetic interactions

Attila Balint, Robbie Loewith, Michael Costanzo, 2018 .

A Scalable Approach for Discovering Conserved Active Subnetworks across Species

Wei-Shou Hu, Catherine M. Verfaillie, Chad L. Myers, 2010, PLoS Comput. Biol..

SGAtools: one-stop analysis and visualization of array-based genetic interaction screens

Leopold Parts, Omar Wagih, Michael Costanzo, 2013, Nucleic Acids Res..

A recursive QR approach to adaptive equalization of time-varying MIMO channels

Sun-Yuan Kung, Xinying Zhang, Chad L. Myers, 2005, Commun. Inf. Syst..

An association analysis approach to biclustering

Vipin Kumar, Michael S. Steinbach, Gowtham Atluri, 2009, KDD.

DRYGIN: a database of quantitative genetic interaction networks in yeast

Gary D. Bader, Gary D Bader, Judice L. Y. Koh, 2009, Nucleic Acids Res..

A scalable method for integration and functional analysis of multiple microarray datasets

Olga G. Troyanskaya, Curtis Huttenhower, Chad L. Myers, 2006, Bioinform..

Large-scale interpretation of chemical-genetic interaction profiles using a genetic interaction network

Minoru Yoshida, Justin Nelson, Yoshikazu Ohya, 2017, bioRxiv.

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action

Minoru Yoshida, Chad L. Myers, Hamid Safizadeh, 2017, bioRxiv.

Accurate detection of aneuploidies in array CGH and gene expression microarray data

Sun-Yuan Kung, Olga G. Troyanskaya, Chad L. Myers, 2004, Bioinform..

Incorporating functional inter-relationships into protein function prediction algorithms

Vipin Kumar, Gaurav Pandey, Chad L. Myers, 2009, BMC Bioinformatics.

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm332 Data and text mining

Olga G. Troyanskaya, Chad L. Myers, O. Troyanskaya, 2022 .

Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Olga G. Troyanskaya, Curtis Huttenhower, Nathan O. Siemers, 2007, BMC Bioinformatics.

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interaction networks

Minoru Yoshida, Yoshikazu Ohya, Michael Costanzo, 2018 .

A recursive QR approach to semi-blind equalization of time-varying MIMO channels

Sun-Yuan Kung, Xinying Zhang, Chad L. Myers, 2004, 2004 IEEE International Conference on Acoustics, Speech, and Signal Processing.

Analysis of Barcode sequence features to find anomalies due to amplification Bias pdf

Chad L. Myers, Raamesh Deshpande, Chandrima Sarkar, 2014, ArXiv.

Subspace Differential Coexpression Analysis: Problem Definition and a General Approach

Vipin Kumar, Michael S. Steinbach, Gang Fang, 2010, Pacific Symposium on Biocomputing.

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing

TaeHyung Kim, Chad L. Myers, Philip M. Kim, 2013, PLoS Comput. Biol..

Functional Annotation of Chemical Libraries across Diverse Biological Processes

Minoru Yoshida, Yoshikazu Ohya, Michael Costanzo, 2017 .

Discovering coherent value bicliques in genetic interaction data

Gowtham Atluri, Gaurav Pandey, Chad L. Myers, 2010, KDD 2010.

An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions

Vipin Kumar, Jun Zhu, Gaurav Pandey, 2010, PLoS Comput. Biol..

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool

Olga G. Troyanskaya, Curtis Huttenhower, Chad L. Myers, 2006, BMC Bioinformatics.

A Genomewide Functional Network for the Laboratory Mouse

Yuanfang Guan, Olga G. Troyanskaya, Carol J. Bult, 2008, PLoS Comput. Biol..

Characterization of systems-level organization through mining large-scale genetic interaction networks

Sunayan Bandyopadhyay, Chad L. Myers, Yungil Kim, 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics.

12621 Targeted Chemical-Genetic Screen Platform for Identifying Drug Modes-of-Action

Maximilian Billmann, Henry N. Ward, Chad L. Myers, 2021 .

Evaluation and Design of Genome-wide CRISPR/Cas9 Knockout Screens

Keith Lawson, Maximilian Billmann, Michael Aregger, 2017, bioRxiv.

Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize[OPEN]

Chad L. Myers, Jean-Michel Michno, Ivan Baxter, 2017, Plant Cell.

Context-sensitive methods for learning from genomic data

Chad L. Myers, 2008 .

Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

C. Robin Buell, Chad L. Myers, Shawn M. Kaeppler, 2013, PloS one.

Integrating genetic and protein-protein interaction networks maps a functional wiring diagram of a cell.

Maximilian Billmann, Michael Costanzo, Henry N. Ward, 2018, Current opinion in microbiology.

Unraveling gene function in agricultural species using gene co-expression networks.

Chad L. Myers, Jean-Michel Michno, C. Myers, 2017, Biochimica et biophysica acta. Gene regulatory mechanisms.

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

Olga G. Troyanskaya, A. P. Hayes, Michael Costanzo, 2009, PLoS genetics.

Systematic analysis of complex genetic interactions

Attila Balint, Robbie Loewith, Michael Costanzo, 2018, Science.

Comparison of Profile Similarity Measures for Genetic Interaction Networks

Chad L. Myers, Raamesh Deshpande, Benjamin VanderSluis, 2013, PloS one.

Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network.

Timothy R. Hughes, Chad L. Myers, Justin Nelson, 2013, Molecular cell.

Efficient strategies for screening large-scale genetic interaction networks

Michael Costanzo, Chad L. Myers, Raamesh Deshpande, 2017, bioRxiv.

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action

Chad L. Myers, Justin Nelson, Scott Simpkins, 2017 .

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation

Jeff Piotrowski, Chad L. Myers, Charles Boone, 2015, Biotechnology for Biofuels.