Matthew E Monroe

发表

PRISM: A data management system for high‐throughput proteomics

Nikola Tolić, Richard D Smith, Gary R Kiebel, 2006, Proteomics.

Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data*

Paul D Piehowski, Ronald J Moore, Richard D Smith, 2018, Molecular & Cellular Proteomics.

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.

Matthew E Monroe, Feng Yang, Xiuxia Du, 2008, Journal of proteome research.

Block design with common reference samples enables robust large-scale label-free quantitative proteome profiling.

Paul D Piehowski, Ronald J Moore, Vladislav A Petyuk, 2020, Journal of proteome research.

Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic data

Matthew E Monroe, Kelly G Stratton, Charles Ansong, 2019, Bioinform..

Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information.

Richard D Smith, Gary R Kiebel, Ken J Auberry, 2010, Journal of proteomics & bioinformatics.

An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics

Richard D Smith, Samuel H Payne, Matthew E Monroe, 2015, Journal of The American Society for Mass Spectrometry.

Multidimensional proteome analysis of human mammary epithelial cells.

Ronald J Moore, Matthew E Monroe, David G Camp, 2004, Journal of proteome research.

Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry

Ronald J Moore, Matthew E Monroe, Marina A Gritsenko, 2005, Proteomics.

Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.

Ronald J Moore, Matthew E Monroe, Tao Liu, 2005, Journal of proteome research.

Application of the accurate mass and time tag approach in studies of the human blood lipidome.

Ronald J Moore, Navdeep Jaitly, Matthew E Monroe, 2008, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus–mediated liver disease posttransplantation

Matthew E Monroe, Marina A Gritsenko, Kathie-Anne Walters, 2012, Hepatology.

AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis.

Matthew E Monroe, Gordon A Anderson, Nikola Tolic, 2005, Methods of biochemical analysis.

Targeted Protein Degradation by Salmonella under Phagosome-mimicking Culture Conditions Investigated Using Comparative Peptidomics*S

Matthew E Monroe, Fred Heffron, Thomas O Metz, 2007, Molecular & Cellular Proteomics.

Detection and identification of heme c-modified peptides by histidine affinity chromatography, high-performance liquid chromatography-mass spectrometry, and database searching.

Matthew E Monroe, Liang Shi, Eric D Merkley, 2012, Journal of proteome research.

Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.

Ying Xu, Ronald J Moore, Matthew E Monroe, 2006, Analytical chemistry.

Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model.

Vladislav A Petyuk, Matthew E Monroe, Athena A Schepmoes, 2010, Journal of proteome research.

Quantitative site-specific reactivity profiling of S-nitrosylation in mouse skeletal muscle using cysteinyl peptide enrichment coupled with mass spectrometry.

Matthew E Monroe, David G Camp, Wei-Jun Qian, 2013, Free radical biology & medicine.

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry.

Paul D Piehowski, Vladislav A Petyuk, Samuel H Payne, 2013, International journal of mass spectrometry.

Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.

Ronald J Moore, Matthew E Monroe, Marina A Gritsenko, 2008, Journal of proteome research.

Accounting for population variation in targeted proteomics.

Grant M Fujimoto, Samuel H Payne, Matthew E Monroe, 2014, Journal of proteome research.

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences.

Ronald J Moore, Matthew E Monroe, Athena A Schepmoes, 2010, Journal of proteome research.

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

Matthew E Monroe, Feng Yang, Samuel O Purvine, 2012, Proceedings of the National Academy of Sciences.

Quantitative Proteome Analysis of Human Plasma following in Vivo Lipopolysaccharide Administration Using 16O/18O Labeling and the Accurate Mass and Time Tag Approach*S

Ronald J Moore, Matthew E Monroe, Gordon A Anderson, 2005, Molecular & Cellular Proteomics.

Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR‐1 using LC‐MS based proteomics

Matthew E Monroe, Gordon A Anderson, James K Fredrickson, 2005, Proteomics.

Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.

Matthew E Monroe, Feng Yang, Ruihua Fang, 2006, Journal of proteome research.

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects.

Qibin Zhang, Vladislav A Petyuk, Matthew E Monroe, 2011, Journal of proteome research.

A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy

Matthew E Monroe, Joel G Pounds, Richard C Zangar, 2005, Proteomics.

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome.

Matthew E Monroe, Tao Liu, Lars J Kangas, 2005, Journal of proteome research.

Estimating probabilities of peptide database identifications to LC-FTICR-MS observations

Matthew E Monroe, Kevin K Anderson, Don S Daly, 2006, Proteome Science.

Enhancing bottom‐up and top‐down proteomic measurements with ion mobility separations

Ronald J Moore, Matthew E Monroe, Erin Shammel Baker, 2015, Proteomics.

An efficient data format for mass spectrometry-based proteomics

Matthew E Monroe, Gordon A Anderson, Anuj R Shah, 2010, Journal of the American Society for Mass Spectrometry.

Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.

Ronald J Moore, Matthew E Monroe, Nathan P Manes, 2008, Journal of proteome research.

Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis.

Matthew E Monroe, Gordon A Anderson, Ruihua Fang, 2004, Omics : a journal of integrative biology.

In-source fragmentation and the sources of partially tryptic peptides in shotgun proteomics.

Matthew E Monroe, David G Camp, Wei-Jun Qian, 2013, Journal of proteome research.

Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics.

Ronald J Moore, Matthew E Monroe, Athena A Schepmoes, 2010, Journal of proteome research.

Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.

Vladislav A Petyuk, Navdeep Jaitly, Matthew E Monroe, 2007, Genome research.

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry.

Ronald J Moore, Matthew E Monroe, Thomas O Metz, 2016, The Analyst.