Sophie Barbe

发表

Guaranteed Diversity & Quality for the Weighted CSP

Simon de Givry, Thomas Schiex, George Katsirelos, 2019, 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI).

Positive multistate protein design

Thomas Schiex, David Simoncini, Manon Ruffini, 2020, Bioinform..

Deterministic Search Methods for Computational Protein Design.

Thomas Schiex, Sophie Barbe, Seydou Traoré, 2017, Methods in molecular biology.

A new framework for computational protein design through cost function network optimization

Simon de Givry, Thomas Schiex, George Katsirelos, 2013, Bioinform..

Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure

Thomas Schiex, Sophie Barbe, Clément Viricel, 2016, CP.

Guaranteed Discrete Energy Optimization on Large Protein Design Problems.

Thomas Schiex, David Simoncini, Sophie Barbe, 2015, Journal of chemical theory and computation.

Encoding molecular motions in voxel maps

Thierry Siméon, Juan Cortés, Sophie Barbe, 2009, 2009 IEEE International Conference on Robotics and Automation.

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems

Thomas Schiex, Thomas Simonson, Sophie Barbe, 2018, J. Chem. Inf. Model..

Computational Protein Design as a Cost Function Network Optimization Problem

Simon de Givry, Thomas Schiex, George Katsirelos, 2012, CP.

Ab initio determination of the flexibility of 2′‐aminoribonucleosides and 2′‐aminoarabinonucleosides inserted in duplexes

Sophie Barbe, Marc Le Bret, S. Barbe, 2008, J. Comput. Chem..

Computational Enzyme Design through deterministic optimization and counting

Simon de Givry, Thomas Schiex, Sophie Barbe, 2015 .

Enzymes to unravel bioproducts architecture.

Sophie Barbe, Claire Bourlieu, Gabriel Paës, 2020, Biotechnology advances.

Fitness landscape analysis around the optimum in computational protein design

Sébastien Vérel, Thomas Schiex, Sophie Barbe, 2018, GECCO.

Encoding molecular motions in voxel maps

Thierry Siméon, Juan Cortés, Sophie Barbe, 2009, ICRA.

Computational protein design as an optimization problem

Simon de Givry, Thomas Schiex, Barry O'Sullivan, 2014, Artif. Intell..

A structural homology approach for computational protein design with flexible backbone

Thomas Schiex, Kam Y. J. Zhang, David Simoncini, 2018, Bioinform..

Approximate Counting with Deterministic Guarantees for Affinity Computation

Simon de Givry, Thomas Schiex, Sophie Barbe, 2015, MCO.

Fast search algorithms for computational protein design

Bruce Randall Donald, Thomas Schiex, Sophie Barbe, 2016, J. Comput. Chem..

Cost function network‐based design of protein‐protein interactions: predicting changes in binding affinity

Simon de Givry, Thomas Schiex, Sophie Barbe, 2018, Bioinform..

Computational protein design to accelerate the conception of fine-tuned biocatalysts

Thomas Schiex, Sophie Barbe, Juan Cortés, 2017 .

Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods

Simon de Givry, Thomas Schiex, George Katsirelos, 2021, Algorithms.

An Atomistic Statistically Effective Energy Function for Computational Protein Design.

Sophie Barbe, Isabelle André, Christopher M Topham, 2016, Journal of chemical theory and computation.

Control of Lipase Enantioselectivity by Engineering the Substrate Binding Site and Access Channel

Thierry Siméon, Juan Cortés, Magali Remaud-Siméon, 2009, Chembiochem : a European journal of chemical biology.

Computer-Aided Engineering of a Transglycosylase for the Glucosylation of an Unnatural Disaccharide of Relevance for Bacterial Antigen Synthesis

Sophie Barbe, Yann Le Guen, Magali Remaud-Simeon, 2015 .

A Structure‐Controlled Investigation of Lipase Enantioselectivity by a Path‐Planning Approach

Thierry Siméon, Juan Cortés, Sophie Barbe, 2008, Chembiochem : a European journal of chemical biology.

Mechanism of HIV-1 integrase inhibition by styrylquinoline derivatives in vitro.

Sophie Barbe, Christian Auclair, Jean-François Mouscadet, 2004, Molecular pharmacology.

A mixed molecular modeling‐robotics approach to investigate lipase large molecular motions

Thierry Siméon, Juan Cortés, Magali Remaud-Siméon, 2011, Proteins.