Amanda Paulovich

Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)*

Christoph H Borchers, Birgit Schilling, Michael P. Cusack, 2013, Molecular & Cellular Proteomics.

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Pablo Tamayo, Aravind Subramanian, Sayan Mukherjee, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Signal Maps for Mass Spectrometry-based Comparative Proteomics*

Benno Schwikowski, Jeffrey Whiteaker, Heidi Zhang, 2006, Molecular & Cellular Proteomics.

A platform for accurate mass and time analyses of mass spectrometry data.

Jimmy Eng, Yan Liu, Amanda Paulovich, 2007, Journal of proteome research.

Assessing Bias in Experiment Design for Large Scale Mass Spectrometry-based Quantitative Proteomics*S

Benno Schwikowski, Heidi Zhang, Ruedi Aebersold, 2007, Molecular & Cellular Proteomics.

Cancer biomarkers: a systems approach

Amanda Paulovich, Elizabeth Swisher, David Mankoff, 2006, Nature Biotechnology.

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Jeffrey Whiteaker, Heidi Zhang, Pei Wang, 2006, Journal of proteome research.

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities

Subha Madhavan, Peter B. McGarvey, Li Ding, 2019, Cell.

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

Adam Rauch, Jeffrey Whiteaker, Heidi Zhang, 2006, Journal of proteome research.