Simon K. Warfield

发表

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2005, Digital Image Computing: Techniques and Applications (DICTA'05).

Robust nonrigid registration to capture brain shift from intraoperative MRI

Hervé Delingette, Olivier Clatz, Nicholas Ayache, 2005, IEEE Transactions on Medical Imaging.

Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME)

Simon K. Warfield, Sila Kurugol, Moti Freiman, 2015, MICCAI.

Toward an accurate multi-fiber assessment strategy for clinical practice

Simon K. Warfield, Benoit Scherrer, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

New Approach for Efficient Prediction of Brain Deformation and Updating of Preoperative Images Based on the Extended Finite Element Method

Simon K. Warfield, Lara M. Vigneron, Jacques Verly, 2004 .

On Extended Finite Element Method (XFEM) for Modelling of Organ Deformations Associated with Surgical Cuts

Simon K. Warfield, Lara M. Vigneron, Jacques G. Verly, 2004, ISMS.

Segmentation of Meningiomas and Low Grade Gliomas in MRI

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1999, MICCAI.

A new classifier feature space for an improved Multiple Sclerosis lesion segmentation

Simon K. Warfield, Xavier Tomas-Fernandez, S. Warfield, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Motion‐robust parameter estimation in abdominal diffusion‐weighted MRI by simultaneous image registration and model estimation

Simon K. Warfield, Sila Kurugol, Moti Freiman, 2017, Medical Image Anal..

Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging

Simon K. Warfield, Burak Erem, Damon E. Hyde, 2017, IEEE Transactions on Medical Imaging.

Automated detection of white matter fiber bundles

Simon K. Warfield, Olivier Commowick, Xavier Tomas-Fernandez, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Accelerating Image Registration With the Johnson–Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy

Simon K. Warfield, Ayelet Akselrod-Ballin, Davi Bock, 2011, IEEE Transactions on Medical Imaging.

ODE-based Deep Network for MRI Reconstruction pdf

Simon K. Warfield, Onur Afacan, Ali Pour Yazdanpanah, 2019, ArXiv.

A New Technique for Multi-modal 3D Image Registration

William M. Wells, Simon K. Warfield, Wilfried Philips, 2003, WBIR.

A Flux-Conservative Finite Difference Scheme for Anisotropic Bioelectric Problems

Karol Miller, Simon K. Warfield, Adam Wittek, 2019 .

Cortical brain structures segmentation using constrained optimization and intensity coupling

Simon K. Warfield, Alireza Akhondi Asl, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE

Simon K. Warfield, Olivier Commowick, Alireza Akhondi Asl, 2012, IEEE Transactions on Medical Imaging.

Controllable spatio-temporal smoothness constraints for EEG source localization

Simon K. Warfield, Damon Hyde, Damon E. Hyde, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures

Guido Gerig, Ron Kikinis, Simon K. Warfield, 2008, ISVC.

Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients

Alexandra J. Golby, Simon K. Warfield, Julien Dauguet, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Efficient multi-modal dense field non-rigid registration: alignment of histological and section images

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2005, Medical Image Anal..

Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach

Simon K. Warfield, Alireza Akhondi Asl, S. Warfield, 2012, MICCAI.

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices

Simon K. Warfield, Sila Kurugol, Onur Afacan, 2017, CMMI/RAMBO/SWITCH@MICCAI.

Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data

Simon K. Warfield, Julien Dauguet, Davi Bock, 2007, MICCAI.

A quantitative assessment of approaches to mesh generation for surgical simulation

Sébastien Ourselin, Simon K. Warfield, Andriy Fedorov, 2008, Engineering with Computers.

Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations

Simon K. Warfield, Ferenc A. Jolesz, Stuart G. Silverman, 2007, MICCAI.

Surface Based Atlas Matching of the Brain Using Deformable Surfaces and Volumetric Finite Elements

Jean-Philippe Thiran, Martha Elizabeth Shenton, Ron Kikinis, 2001, MICCAI.

Biomechanical modeling and computer simulation of the brain during neurosurgery

Karol Miller, Ron Kikinis, Simon K. Warfield, 2019, International journal for numerical methods in biomedical engineering.

3D Statistical Shape Models to Embed Spatial Relationship Information

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2005, CVBIA.

Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI

Andrew Melbourne, Simon K. Warfield, Sebastien Ourselin, 2017, NeuroImage.

Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior

Simon K. Warfield, Sila Kurugol, Yechiel Lamash, 2018, DLMIA/ML-CDS@MICCAI.

Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm

William M. Wells, Simon K. Warfield, Kelly H. Zou, 2002, MICCAI.

Learning to Detect Brain Lesions from Noisy Annotations

Simon K. Warfield, Jurriaan M. Peters, Davood Karimi, 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

Deep learning with noisy labels: exploring techniques and remedies in medical image analysis

Simon K. Warfield, Haoran Dou, Davood Karimi, 2020, Medical Image Anal..

Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy

Simon K. Warfield, Joseph R. Madsen, Vahid Taimouri, 2013, International Journal of Computer Assisted Radiology and Surgery.

Super-Resolution in Diffusion-Weighted Imaging

Simon K. Warfield, Benoit Scherrer, Ali Gholipour, 2011, MICCAI.

Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE)

Ron Kikinis, William M. Wells, Simon K. Warfield, 2004, MICCAI.

Visualizing cerebral vasculature: imaging limitations from 2D and 3D data

Nicholas J. Mankovich, Simon K. Warfield, Tatjana Zrimec, 1994, Medical Imaging.

An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images

Ron Kikinis, Simon K. Warfield, Andriy Fedorov, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Retrospective local artefacts detection in diffusion-weighted images using the Random Sample Consensus (RANSAC) paradigm

Simon K. Warfield, Benoit Scherrer, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

SLIMM: Slice localization integrated MRI monitoring

Simon K. Warfield, Onur Afacan, Yao Sui, 2020, NeuroImage.

Optimized magnetic resonance diffusion protocol for ex-vivo whole human brain imaging with a clinical scanner

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2015, Medical Imaging.

XFEM-based modeling of successive resections for preoperative image updating

Simon K. Warfield, Lara M. Vigneron, Jacques G. Verly, 2006, SPIE Medical Imaging.

Improved fidelity of brain microstructure mapping from single-shell diffusion MRI

Simon K. Warfield, Benoit M. Macq, Benoit Scherrer, 2015, Medical Image Anal..

Simultaneous Truth and Performance Level Estimation Through Fusion of Probabilistic Segmentations

Simon K. Warfield, Alireza Akhondi Asl, S. Warfield, 2013, IEEE Transactions on Medical Imaging.

Non-rigid alignment of preoperative MRI, fMRI and DT-MRI with intraoperative MRI to enhance visualization and navigation in image-guided neurosurgery

Simon K. Warfield, Ferenc A. Jolesz, Stephen Whalen, 2006 .

Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery

Alexandra J. Golby, Simon K. Warfield, Andriy Fedorov, 2006, SPIE Medical Imaging.

Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging

Simon K. Warfield, Onur Afacan, Ali Gholipour, 2018, MICCAI.

AUTOMATIC SEGMENTATION OF THE BONES FROM MR IMAGES OF THE KNEE

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Measuring effects of latency in brain activity with fMRI

Simon K. Warfield, Raghu Machiraju, Steffen Sammet, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Tracking the Cortico-Spinal Tract as a Multi-Modal Distribution of Streamlines from Local White Matter Microstructure Models

Simon K. Warfield, Olivier Commowick, Xavier Tomas-Fernandez, 2014 .

Nonrigid registration of 3D tensor medical data

Juan Ruiz-Alzola, Carl-Fredrik Westin, Ron Kikinis, 2002, Medical Image Anal..

A fuzzy system for helping medical diagnosis of malformations of cortical development

Juan Ruiz-Alzola, Simon K. Warfield, Silvia Alayón, 2007, J. Biomed. Informatics.

7867 Diffusion Weighted MRI of Moving Subjects based on Motion-Induced Random Oversampling

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2014 .

Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves

Simon K. Warfield, Jeannette M. Perez-Rossello, Michael J. Callahan, 2013, Medical Image Anal..

Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships

Simon K. Warfield, Benoit Scherrer, Ralph O. Suarez, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

Cross-scanner and cross-protocol harmonisation of multi-shell diffusion MRI data: open challenge and evaluation results

Josien P. W. Pluim, Simon K. Warfield, Jelle Veraart, 2019 .

Registration and Analysis of White Matter Group Differences with a Multi-fiber Model

Simon K. Warfield, Benoit M. Macq, Olivier Commowick, 2012, MICCAI.

Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm

Simon K. Warfield, Neil I. Weisenfeld, N. Weisenfeld, 2011, MICCAI.

Statistical Validation of Automated Probabilistic Segmentation against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors

Ron Kikinis, William M. Wells, Simon K. Warfield, 2002, MICCAI.

Reproducibility of Laplacian Wall Thickness Measurements of the Gallbladder with Varying CT Slice Thickness

Jonathan G. Goldin, Simon K. Warfield, M. N. Prasad, 2009, J. Signal Process. Syst..

Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images

Simon K. Warfield, Onur Afacan, Bahram Marami, 2019, NeuroImage.

A Volumetric Optical Flow Method for Measurement of Brain Deformation from Intraoperative Magnetic Resonance Images

Nobuhiko Hata, Ron Kikinis, William M. Wells, 1999, MICCAI.

Symmetric block-matching registration for the distortion correction of Echo-Planar images

Simon K. Warfield, Olivier Commowick, Christian Barillot, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Estimation of inferential uncertainty in assessing expert segmentation performance from STAPLE.

Simon K. Warfield, Olivier Commowick, 2010, IEEE transactions on medical imaging.

Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI

W. Eric L. Grimson, Simon K. Warfield, Steven Haker, 2005, MICCAI.

Fractional Segmentation of White Matter

Carl-Fredrik Westin, Ron Kikinis, Simon K. Warfield, 1999, MICCAI.

Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly

Simon K. Warfield, Alireza Akhondi Asl, Ali Gholipour, 2012, NeuroImage.

APPLICATION-DRIVEN QUANTITATIVE ASSESSMENT OF APPROACHES TO MESH GENERATION

Sébastien Ourselin, Simon K. Warfield, Andriy Fedorov, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Evaluation of numerical techniques for solving the current injection problem in biological tissues

Simon K. Warfield, Dana H. Brooks, Moritz Dannhauer, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations

Jean-Philippe Thiran, Simon K. Warfield, Benoit M. Macq, 2019, NeuroImage.

Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets for IsoIntense Infant Brain MRI Segmentation pdf

Simon K. Warfield, Sanjay P. Prabhu, Ali Gholipour, 2018, ArXiv.

Adaptive, template moderated, spatially varying statistical classification

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2000, Medical Image Anal..

Estimation of the deformations induced by articulated bodies: Registration of the spinal column

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2007, Biomed. Signal Process. Control..

A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2006, SPIE Medical Imaging.

Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI

Simon K. Warfield, Ludovic Noels, Lara M. Vigneron, 2012, Int. J. Biomed. Imaging.

Computational model of levator ani muscle stretch during vaginal delivery

Simon K. Warfield, Petr Krysl, Abhishek Trivedi, 2006 .

Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery

Alexandra J. Golby, Ron Kikinis, Simon K. Warfield, 2007, International Conference on Computational Science.

A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI

Simon K. Warfield, Olivier Commowick, Alessandra Menafoglio, 2018, MICCAI.

Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans

Simon K. Warfield, Sanjay P. Prabhu, Mustafa Sahin, 2010, MICCAI.

Biomechanical Model as a Registration Tool for Image-Guided Neurosurgery: Evaluation Against BSpline Registration

Karol Miller, Ron Kikinis, Simon K. Warfield, 2013, Annals of Biomedical Engineering.

Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: Perinatal predictors and functional significance at age 7

Gary F. Egan, Simon K. Warfield, Nathan Faggian, 2013, NeuroImage.

A generalized correlation coefficient: Application to DTI and multi-fiber DTI

Simon K. Warfield, Benoit M. Macq, Maxime Taquet, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI

Simon K. Warfield, Andrea J. U. Mewes, Neil I. Weisenfeld, 2006, MICCAI.

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, MICCAI.

Voxel-Based Dipole Orientation Constraints for Distributed Current Estimation

Simon K. Warfield, Frank H. Duffy, Damon Hyde, 2014, IEEE Transactions on Biomedical Engineering.

Issues in FEM-based Modeling of Brain Shift in Neurosurgery

Simon K. Warfield, Lara M. Vigneron, Jacques Verly, 2008 .

An Intrinsic Coordinate System of the Developing Human Brain

Ron Kikinis, William M. Wells, Simon K. Warfield, 2001 .

Computing Reaction Forces on Surgical Tools for Robotic Neurosurgery and Surgical Simulation

Karol Miller, Simon K. Warfield, Adam Wittek, 2004 .

Deformable registration of DT-MRI data based on transformation invariant tensor characteristics

Carl-Fredrik Westin, Simon K. Warfield, Charles R. G. Guttmann, 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

An articulated registration method

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2005, IEEE International Conference on Image Processing 2005.

Tractography of the optic radiation with diffusion compartment imaging and multi-fascicle modeling

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2015 .

: Multi-subject Registration for Unbiased Statistical Atlas Construction

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2004, MICCAI.

Suite of Meshless Algorithms for Accurate Computation of Soft Tissue Deformation for Surgical Simulation

Karol Miller, Simon K. Warfield, Adam Wittek, 2019, Medical Image Anal..

Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function

Simon K. Warfield, Sila Kurugol, Onur Afacan, 2020, Medical Image Anal..

Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts

W. Eric L. Grimson, Carl-Fredrik Westin, William M. Wells, 2007, IPMI.

Application of XFEM to image-guided surgery

Simon K. Warfield, Lara M. Vigneron, Jacques Verly, 2005 .

Capturing intraoperative deformations: research experience at Brigham and Women's hospital

Carl-Fredrik Westin, Alexandra J. Golby, Ron Kikinis, 2005, Medical Image Anal..

Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2000, ACM/IEEE SC 2000 Conference (SC'00).

Anisotropic partial volume CSF modeling for EEG source localization

Simon K. Warfield, Frank H. Duffy, Damon Hyde, 2012, NeuroImage.

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach

Simon K. Warfield, Olivier Commowick, Ralph O. Suarez, 2012, NeuroImage.

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2010, IEEE Transactions on Medical Imaging.

Normalization of joint image-intensity statistics in MRI using the Kullback-Leibler divergence

Simon K. Warfield, Neil I. Weisenfeld, N. Weisenfeld, 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution

Simon K. Warfield, Olivier Commowick, Onur Afacan, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

A Framework for the Analysis of Diffusion Compartment Imaging (DCI)

Simon K. Warfield, Benoit Scherrer, Maxime Taquet, 2015, Visualization and Processing of Higher Order Descriptors for Multi-Valued Data.

A registration method for improving quantitative assessment in probabilistic diffusion tractography

Simon K. Warfield, Jeff L. Waugh, Jacob M. Levenstein, 2019, NeuroImage.

Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions

Simon K. Warfield, Olivier Commowick, Christian Barillot, 2017, IEEE Transactions on Medical Imaging.

A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging pdf

Simon K. Warfield, Davood Karimi, Lana Vasung, 2020, Medical Image Anal..

Population intensity outliers or a new model for brain WM abnormalities

Simon K. Warfield, Xavier Tomas-Fernandez, S. Warfield, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Whole brain group network analysis using network bias and variance parameters

Simon K. Warfield, Benoit Scherrer, Jurriaan M. Peters, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Registration of MRI and EEG based on internal and external anatomical similarities

Simon K. Warfield, Boštjan Likar, Franjo Pernuš, 2008 .

An Efficient Algorithm for Multiple Sclerosis Segmentation from Brain MRI

Juan Ruiz-Alzola, Simon K. Warfield, Elsa M. Macías, 2003, EUROCAST.

On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images

Nasser Kehtarnavaz, Simon K. Warfield, Benoit Scherrer, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Segmentation of magnetic resonance images of the brain

Simon K. Warfield, S. Warfield, 1997 .

A unified framework for clustering and quantitative analysis of white matter fiber tracts

W. Eric L. Grimson, William M. Wells, Simon K. Warfield, 2008, Medical Image Anal..

Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI

Simon K. Warfield, Sila Kurugol, Onur Afacan, 2016, Medical Image Anal..

Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging

Simon K. Warfield, Benoit Scherrer, Sanjay P. Prabhu, 2017, IPMI.

Validation of image segmentation by estimating rater bias and variance

William M. Wells, Simon K. Warfield, Kelly H. Zou, 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

Multi-Fascicle Model Reconstruction from Acquisitions at a Single b-value with a Population-Informed Prior

Simon K. Warfield, Benoit Scherrer, Maxime Taquet, 2013 .

A High Performance Computing Approach to the Registration of Medical Imaging Data

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1998, Parallel Comput..

Proceedings of the 5th International Workshop on Abdominal Imaging. Computation and Clinical Applications - Volume 8198

Hiroyuki Yoshida, Simon K. Warfield, Michael W. Vannier, 2013 .

Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior

Simon K. Warfield, Onur Afacan, Yao Sui, 2019, MICCAI.

Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance

Simon K. Warfield, Clare M. Tempany, Steven Haker, 2004, MICCAI.

Fetal brain volumetry through MRI volumetric reconstruction and segmentation

Simon K. Warfield, Ali Gholipour, Judy A. Estroff, 2011, International Journal of Computer Assisted Radiology and Surgery.

Changes in neonatal regional brain volume associated with preterm birth and perinatal factors

Simon K. Warfield, Jian Chen, Richard Beare, 2019, NeuroImage.

Labeling the Brain Surface Using a Deformable Multiresolution Mesh

Simon K. Warfield, Benoit M. Macq, Sylvain Jaume, 2002, MICCAI.

Segmentation of newborn brain MRI

Simon K. Warfield, Andrea J. U. Mewes, Neil I. Weisenfeld, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics

Simon K. Warfield, Dana H. Brooks, Burak Erem, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Adaptive Template Moderated Spatially Varying Statistical Classification

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1998, MICCAI.

Simultaneous validation of image segmentation and assessment of expert quality [tumor MRI application]

William M. Wells, Simon K. Warfield, Michael Kaus, 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

Non-Rigid Registration for Image-Guided Neurosurgery on the TeraGrid: A Case Study

Simon K. Warfield, Andriy Fedorov, Nikos Chrisochoides, 2009 .

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Martin Styner, Isabelle Bloch, Abel G. Silva-Filho, 2018, Scientific Reports.

3D FEM/XFEM-based Biomechanical Brain Modeling for Preoperative Image Update

Simon K. Warfield, Lara M. Vigneron, Jacques Verly, 2007 .

Fast k-NN classification for multichannel image data

Simon K. Warfield, S. Warfield, 1996, Pattern Recognit. Lett..

Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma

Simon K. Warfield, Ayelet Akselrod-Ballin, Davi Bock, 2009, MICCAI.

Serial Intraoperative MR Imaging of Brain Shift

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2001 .

Multiresolution Signal Processing on Meshes for Automatic Pathological Shape Characterization

Ron Kikinis, Simon K. Warfield, Benoit M. Macq, 2001, MICCAI.

Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning

Simon K. Warfield, Jennifer G. Dy, Sila Kurugol, 2019, IEEE Transactions on Medical Imaging.

T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph

Simon K. Warfield, Onur Afacan, Alireza Akhondi Asl, 2014, MICCAI.

Non-Learning based Deep Parallel MRI Reconstruction (NLDpMRI) pdf

Simon K. Warfield, Onur Afacan, Ali Pour Yazdanpanah, 2018, Medical Imaging: Image Processing.

Robust Super-Resolution Volume Reconstruction From Slice Acquisitions: Application to Fetal Brain MRI

Simon K. Warfield, Ali Gholipour, Judy A. Estroff, 2010, IEEE Transactions on Medical Imaging.

A Novel Nonrigid Registration Algorithm and Applications

Martha Elizabeth Shenton, Ron Kikinis, Simon K. Warfield, 2001, MICCAI.

Improved Multi B-Value Diffusion-Weighted MRI of the Body by Simultaneous Model Estimation and Image Reconstruction (SMEIR)

Simon K. Warfield, Onur Afacan, Moti Freiman, 2013, MICCAI.

Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing

Olivier Clatz, Alexandra J. Golby, Ron Kikinis, 2006, SC.

Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection

Simon K. Warfield, Deniz Erdogmus, Sanjay P. Prabhu, 2018, IEEE Access.

Improved registration for large electron microscopy images

Simon K. Warfield, Ayelet Akselrod-Ballin, Davi Bock, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction

André J. W. van der Kouwe, Simon K. Warfield, Martin Polak, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap

Simon K. Warfield, Moti Freiman, Jeannette M. Perez-Rossello, 2011, MICCAI.

Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation

Lucila Ohno-Machado, William M. Wells, Simon K. Warfield, 2005, MICCAI.

Missing Slice Recovery for Tensors Using a Low-Rank Model in Embedded Space

Hidekata Hontani, Simon K. Warfield, Tatsuya Yokota, 2018, 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition.

A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images

Nicholas Ayache, Simon K. Warfield, Alistair A. Young, 2014, Medical Image Anal..

Occlusion points propagation geodesic distance transformation

Juan Ruiz-Alzola, Simon K. Warfield, Elsa M. Macías, 2003, Proceedings 2003 International Conference on Image Processing (Cat. No.03CH37429).

Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery

Olivier Clatz, Alexandra J. Golby, Simon K. Warfield, 2007, NeuroImage.

Spectral Clustering Algorithms for Ultrasound Image Segmentation

Simon K. Warfield, Robert Rohling, Neculai Archip, 2005, MICCAI.

Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study

Simon K. Warfield, Alistair A. Young, Pau Medrano-Gracia, 2011, STACOM.

EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model

Simon K. Warfield, Moritz Dannhauer, Carsten H. Wolters, 2009, NeuroImage.

Statistical modeling and EM clustering of white matter fiber tracts

W. Eric L. Grimson, Simon K. Warfield, Mahnaz Maddah, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Multimodal nonrigid registration using a stochastic gradient approximation

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

Tversky as a Loss Function for Highly Unbalanced Image Segmentation using 3D Fully Convolutional Deep Networks pdf

Simon K. Warfield, Deniz Erdogmus, Sanjay P. Prabhu, 2018, ArXiv.

A template-to-slice block matching approach for automatic localization of brain in fetal MRI

Simon K. Warfield, Vahid Taimouri, Ali Gholipour, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Demons registration with local affine adaptive regularization: application to registration of abdominal structures

Simon K. Warfield, Stephan D. Voss, Moti Freiman, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation

Simon K. Warfield, Benoit Scherrer, David K. Hammond, 2013, IEEE Transactions on Medical Imaging.

Accelerated High Spatial Resolution Diffusion-Weighted Imaging

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2015, IPMI.

Why multiple b-values are required for multi-tensor models. evaluation with a constrained log-euclidean model

Simon K. Warfield, Benoit Scherrer, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Performing brain image warping using the deformation field predicted by a biomechanical model

Karol Miller, Simon K. Warfield, Adam Wittek, 2012 .

Estimation of a Multi-fascicle Model from Single B-Value Data with a Population-Informed Prior

Simon K. Warfield, Benoit M. Macq, Benoit Scherrer, 2013, MICCAI.

A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure

Simon K. Warfield, Benoit M. Macq, Olivier Commowick, 2014, IEEE Transactions on Medical Imaging.

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Martin Styner, Isabelle Bloch, Abel G. Silva-Filho, 2018, bioRxiv.

On the Effects of Model Complexity in Computing Brain Deformation for Image-Guided Neurosurgery

Karol Miller, Simon K. Warfield, Adam Wittek, 2011 .

Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain

Carl-Fredrik Westin, Simon K. Warfield, Julien Dauguet, 2007, NeuroImage.

Intra-operative Update of Neuro-images: Comparison of Performance of Image Warping Using Patient-Specific Biomechanical Model and BSpline Image Registration

Karol Miller, Ron Kikinis, Simon K. Warfield, 2013 .

Neuroimage as a Biomechanical Model: Toward New Computational Biomechanics of the Brain

Karol Miller, Simon K. Warfield, Adam Wittek, 2012 .

Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions

Simon K. Warfield, Benoit Scherrer, Ali Gholipour, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

K-Voronoi diagrams computing in arbitrary domains

Juan Ruiz-Alzola, Simon K. Warfield, Rubén Cárdenes, 2003, Proceedings 2003 International Conference on Image Processing (Cat. No.03CH37429).

Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation

Simon K. Warfield, Jennifer G. Dy, Sila Kurugol, 2018, DLMIA/ML-CDS@MICCAI.

Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI

William M. Wells, Simon K. Warfield, Lilla Zöllei, 2007, NeuroImage.

Capturing Brain Deformation

Carl-Fredrik Westin, Ron Kikinis, William M. Wells, 2003, IS4TH.

An Anisotropic Material Model for Image Guided Neurosurgery

W. Eric L. Grimson, Alexandra J. Golby, Ron Kikinis, 2004, MICCAI.

Abdominal Imaging. Computation and Clinical Applications

Hiroyuki Yoshida, Simon K. Warfield, Michael W. Vannier, 2013, Lecture Notes in Computer Science.

Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis

Simon K. Warfield, Sila Kurugol, Vahid Taimouri, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Validation of Image Segmentation by Estimating Rater Bias and Variance

William M. Wells, Simon K. Warfield, Kelly H. Zou, 2006, MICCAI.

Interpolating multi-fiber models by Gaussian mixture simplification

Simon K. Warfield, Benoit M. Macq, Benoit Scherrer, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Intraoperative Segmentation and Nonrigid Registration for Image Guided Therapy

Kemal Tuncali, Ron Kikinis, Simon K. Warfield, 2000, MICCAI.

SoftSTAPLE: Truth and performance-level estimation from probabilistic segmentations

Simon K. Warfield, Neil I. Weisenfeld, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2016, MICCAI.

Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model

Ron Kikinis, Simon K. Warfield, Benoit M. Macq, 2001, IEEE Trans. Medical Imaging.

High Performance Computing in Image Guided Therapy: Computer Assisted Three-Dimensional Planning and Real-Time Navigation for Neurosurgical Procedures

Ron Kikinis, Simon K. Warfield, Ion-Florin Talos, 2001, Bildverarbeitung für die Medizin.

Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation

Kemal Tuncali, Ron Kikinis, Simon K. Warfield, 2000, MICCAI.

Consensus equilibrium framework for super-resolution and extreme-scale CT reconstruction

Charles A. Bouman, Samuel P. Midkiff, Simon K. Warfield, 2019, SC.

A Prospective Multi-institutional Study of the Reproducibility of fMRI: A Preliminary Report from the Biomedical Informatics Research Network

Meng Wang, Ron Kikinis, William M. Wells, 2004, MICCAI.

24 – Advanced Nonrigid Registration Algorithms for Image Fusion

Juan Ruiz-Alzola, Carl-Fredrik Westin, Ron Kikinis, 2002 .

Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery

Carl-Fredrik Westin, Alexandra J. Golby, Ron Kikinis, 2003, MICCAI.

Automatic Generation of 3D Statistical Shape Models of the Knee Bones

Stuart Crozier, Jurgen Fripp, Simon K. Warfield, 2005 .

Computational Brain Tumours

Hervé Delingette, Olivier Clatz, Nicholas Ayache, 2007, ERCIM News.

Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients

Simon K. Warfield, Onur Afacan, Vahid Taimouri, 2013, Abdominal Imaging.

Coupling Statistical Segmentation and PCA Shape Modeling

W. Eric L. Grimson, Kilian M. Pohl, Ron Kikinis, 2004, MICCAI.

A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery

Simon K. Warfield, Kim K. Baldridge, Amitava Majumdar, 2005, International Conference on Computational Science.

Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images

W. Eric L. Grimson, Kilian M. Pohl, Martha Elizabeth Shenton, 2002, MICCAI.

Brain Shift Computation Using a Fully Nonlinear Biomechanical Model

Karol Miller, Ron Kikinis, Simon K. Warfield, 2005, MICCAI.

Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2017, NeuroImage.

Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI

Simon K. Warfield, Onur Afacan, Aymeric Stamm, 2015, MICCAI.

Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2015, Medical Imaging.

Four Neuroimaging Questions that P-Values Cannot Answer (and Bayesian Analysis Can)

Simon K. Warfield, Jurriaan M. Peters, Maxime Taquet, 2014, BAMBI.

High Performance Computing in Image Guided Therapy

Ron Kikinis, Simon K. Warfield, Ion-Florin Talos, 2001 .

Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas

Simon K. Warfield, Grégoire Malandain, Olivier Commowick, 2009, MICCAI.

Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic–ischemic encephalopathy treated with hypothermia

Simon K. Warfield, Janet S. Soul, Dmitry Dukhovny, 2014, NeuroImage.

Physics-Based Iterative Reconstruction for Dual Source and Flying Focal Spot Computed Tomography.

Charles A. Bouman, Xiao Wang, Simon K. Warfield, 2020, Medical physics.

Improved watershed transform for medical image segmentation using prior information

Ron Kikinis, Mariano Alcañiz Raya, Simon K. Warfield, 2004, IEEE Transactions on Medical Imaging.

Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation

Hervé Delingette, Olivier Clatz, Nicholas Ayache, 2005, IEEE Transactions on Medical Imaging.

Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms

Karol Miller, Simon K. Warfield, Adam Wittek, 2009, MICCAI.

Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models

Simon K. Warfield, Alireza Akhondi Asl, Catherine Limperopoulos, 2014, MICCAI.

Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction

Simon K. Warfield, Onur Afacan, Yao Sui, 2020, MICCAI.

Medical Image Analysis for Image Guided Therapy

Simon K. Warfield, 2005, DICTA.

A Logarithmic Opinion Pool Based STAPLE Algorithm for the Fusion of Segmentations With Associated Reliability Weights

Simon K. Warfield, Mark E. Lockhart, Alireza Akhondi Asl, 2014, IEEE Transactions on Medical Imaging.

EVALUATION OF BRAIN IMAGE NONRIGID REGISTRATION ALGORITHMS BASED ON LOG-EUCLIDEAN MR-DTI CONSISTENCY MEASURES

F. Javier Sánchez Castro, Jean-Philippe Thiran, Olivier Clatz, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Real-Time Image Segmentation for Image-Guided Surgery

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1998, Proceedings of the IEEE/ACM SC98 Conference.

Parametric Representation of Multiple White Matter Fascicles from Cube and Sphere Diffusion MRI

Simon K. Warfield, Benoit Scherrer, S. Warfield, 2012, PloS one.

Improved Non-rigid Registration of Prostate MRI

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2004, MICCAI.

Corpus callosum alterations in very preterm infants: Perinatal correlates and 2year neurodevelopmental outcomes

Gary F. Egan, Simon K. Warfield, Nathan Faggian, 2012, NeuroImage.

A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure

Simon K. Warfield, Benoit Scherrer, Jurriaan M. Peters, 2014, MICCAI.

Automatic segmentation of newborn brain MRI

Simon K. Warfield, Neil I. Weisenfeld, N. Weisenfeld, 2009, NeuroImage.

Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison

Rachid Deriche, Simon K. Warfield, Lawrence L. Wald, 2016, 1604.07287.

Muti-shell Diffusion MRI Harmonisation and Enhancement Challenge (MUSHAC): Progress and Results

Josien P. W. Pluim, Simon K. Warfield, Jelle Veraart, 2019, Computational Diffusion MRI.

Localization of stereo-electroencephalography signals using a finite difference complete electrode model

Simon K. Warfield, Xavier Tomas-Fernandez, Damon E. Hyde, 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery

Simon K. Warfield, Lara M. Vigneron, Pierre Robe, 2010, J. Comput. Appl. Math..

Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms

Martin Styner, Karl Krissian, Simon K. Warfield, 2009, Medical Image Anal..

On-demand high performance computing: image guided neuro-surgery feasibility study

Simon K. Warfield, Richard Wolski, Kim K. Baldridge, 2006, 12th International Conference on Parallel and Distributed Systems - (ICPADS'06).

Physics-Based Nonrigid Registration for Medical Image Analysis

Simon K. Warfield, Heinz Handels, Jan Rexilius, 2001 .

A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth

Simon K. Warfield, Onur Afacan, Edward Yang, 2017, Scientific Reports.

Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error

Simon K. Warfield, Benoit Scherrer, Maxime Taquet, 2013, IPMI.

Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method

Simon K. Warfield, Lara M. Vigneron, Jacques G. Verly, 2004, MICCAI.

Adaptive Template Moderated Brain Tumor Segmentation in MRI

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1999, Bildverarbeitung für die Medizin.

Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from Staple

Simon K. Warfield, Olivier Commowick, O. Commowick, 2009, IPMI.

Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients

Olivier Clatz, Simon K. Warfield, Olivier Commowick, 2008, MICCAI.

Validation of 3D assessment of MR imaging-guided percutaneous cryotherapy of a soft-tissue metastasis

Kemal Tuncali, Simon K. Warfield, Stuart G. Silverman, 2004, CARS.

A data-driven approach to discovering common brain anatomy

Simon K. Warfield, Neil I. Weisenfeld, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Anisotropic equivalent conductivity tensors for bioelectric modeling of partial volume effects in cerebrospinal fluid spaces

Simon K. Warfield, Damon Hyde, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Deformable Modeling for Characterizing Biomedical Shape Changes

Simon K. Warfield, Benoit M. Macq, Arya Nabavi, 2000, DGCI.

Automatic Nonrigid Registration for Tracking Brain Shift During Neurosurgery

Ron Kikinis, Simon K. Warfield, Heinz Handels, 2002, Bildverarbeitung für die Medizin.

An EM algorithm for shape classification based on level sets

William M. Wells, Simon K. Warfield, Alan S. Willsky, 2005, Medical Image Anal..

In Silico Tumor Growth: Application to Glioblastomas

Hervé Delingette, Olivier Clatz, Nicholas Ayache, 2004, MICCAI.

Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans

Ron Kikinis, Simon K. Warfield, Benoit M. Macq, 2003, IEEE Transactions on Biomedical Engineering.

Automated Segmentation of MRI of Brain Tumors

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2001 .

A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans

Simon K. Warfield, Yuanyuan Jia, Zhongshi He, 2017, IEEE Transactions on Medical Imaging.

Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices

Simon K. Warfield, Yuanyuan Jia, Zhongshi He, 2016, IEEE Journal of Biomedical and Health Informatics.

Spatially Adaptive Log-Euclidean Polyaffine Registration Based on Sparse Matches

Simon K. Warfield, Benoit M. Macq, Maxime Taquet, 2011, MICCAI.

Polyaffine parametrization of image registration based on geodesic flows

Simon K. Warfield, Signe S. Thorup, Michael S. Hansen, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI

Simon K. Warfield, Olivier Commowick, Onur Afacan, 2018, MICCAI.

EEG to MRI Registration Based on Global and Local Similarities of MRI Intensity Distributions

Bostjan Likar, Franjo Pernus, Ziga Spiclin, 2008, MICCAI.

Geostatistical Medical Image Registration

Juan Ruiz-Alzola, Carl-Fredrik Westin, Simon K. Warfield, 2003, MICCAI.

Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors

Ron Kikinis, William M. Wells, Simon K. Warfield, 2000, MICCAI.

Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing

Gary F. Egan, Simon K. Warfield, Lex W. Doyle, 2011, Neuroinformatics.

Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation

Simon K. Warfield, Sanjay P. Prabhu, Ali Gholipour, 2018, MIDL.

Computational biomechanics of the brain brings real benefits in the operating theatre

Karol Miller, Ron Kikinis, Simon K. Warfield, 2013 .

Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions

Simon K. Warfield, Benoit Scherrer, Ali Gholipour, 2012, Medical Image Anal..

Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI

Gary F. Egan, Simon K. Warfield, Nathan Faggian, 2011, NeuroImage.

Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data

Juan Ruiz-Alzola, Carl-Fredrik Westin, Ron Kikinis, 2000, MICCAI.

Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information

Jean-Philippe Thiran, Simon K. Warfield, Alireza Akhondi Asl, 2014, MLMI.

Multi-subject variational registration for probabilistic unbiased atlas generation

Simon K. Warfield, Mathieu De Craene, Benoit M. Macq, 2005, IEEE International Conference on Image Processing 2005.

3D Image Matching Using a Finite Element Based Elastic Deformation Model

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 1999, MICCAI.

A Binary Entropy Measure to Assess Nonrigid Registration Algorithms

Ron Kikinis, William M. Wells, Simon K. Warfield, 2001, MICCAI.

Real-time automatic fetal brain extraction in fetal MRI by deep learning

Simon K. Warfield, Deniz Erdogmus, Seyed Sadegh Mohseni Salehi, 2017, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Registration of 3-d intraoperative MR images of the brain using a finite-element biomechanical model

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2000, IEEE Transactions on Medical Imaging.

Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking

Simon K. Warfield, Onur Afacan, Benoit Scherrer, 2016, IEEE Transactions on Medical Imaging.

A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis

Simon K. Warfield, Olivier Commowick, O. Commowick, 2009, IEEE Transactions on Medical Imaging.

AUTOMATED DETECTION OF WHITE MATTER FIBER TRACTS

Simon K. Warfield, Olivier Commowick, Xavier Tomas-Fernandez, 2011 .

Preoperative Brain Image Update with FEM- and XFEM-based Biomechanical Model

Simon K. Warfield, Lara M. Vigneron, Jacques Verly, 2006 .

3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography

Carl-Fredrik Westin, Simon K. Warfield, Julien Dauguet, 2006, MICCAI.

Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation

William M. Wells, Simon K. Warfield, Kelly H. Zou, 2004, IEEE Transactions on Medical Imaging.

Dense deformation field estimation for brain intraoperative images registration

Ron Kikinis, Simon K. Warfield, Benoit M. Macq, 2004, SPIE Medical Imaging.

Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness

Hervé Delingette, Olivier Clatz, Nicholas Ayache, 2005, MICCAI.

Automated template-based brain localization and extraction for fetal brain MRI reconstruction

Meritxell Bach Cuadra, Simon K. Warfield, Reto Meuli, 2017, NeuroImage.

Automatic renal segmentation in DCE-MRI using convolutional neural networks

Simon K. Warfield, Sila Kurugol, Marzieh Haghighi, 2017, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI

Ying Wu, William M. Wells, Simon K. Warfield, 2006, NeuroImage.

Serial registration of intraoperative MR images of the brain

Ron Kikinis, Simon K. Warfield, Benoit M. Macq, 2002, Medical Image Anal..

Objective Evaluation of Accuracy of Intra-Operative Neuroimage Registration

Karol Miller, Ron Kikinis, Simon K. Warfield, 2013 .

Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: A Generic Approach

Jean-Claude Froment, Christian Confavreux, Ron Kikinis, 2001, MICCAI.

A Comparison of Point and Complete Electrode Models in a Finite Difference Model of Invasive Electrode Measurements

Simon K. Warfield, Xavier Tomas-Fernandez, Damon E. Hyde, 2018, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

Abdominal Images Non-rigid Registration Using Local-Affine Diffeomorphic Demons

Simon K. Warfield, Stephan D. Voss, Moti Freiman, 2011, Abdominal Imaging.

Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease

Simon K. Warfield, Sila Kurugol, Onur Afacan, 2014, ABDI@MICCAI.

A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation

Simon K. Warfield, Xavier Tomas-Fernandez, S. Warfield, 2015, IEEE Transactions on Medical Imaging.

Tensor Controlled Local Structure Enhancement of CT Images for Bone Segmentation

Carl-Fredrik Westin, Ron Kikinis, Simon K. Warfield, 1998, MICCAI.

Simon K. Warfield, Deniz Erdogmus, Sanjay P. Prabhu, 2018 .

Automatic Segmentation of the Knee Bones using 3D Active Shape Models

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2006, 18th International Conference on Pattern Recognition (ICPR'06).

Deep Plug-and-Play Prior for Parallel MRI Reconstruction

Simon K. Warfield, Onur Afacan, Ali Pour Yazdanpanah, 2019, 2019 IEEE/CVF International Conference on Computer Vision Workshop (ICCVW).

Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks pdf

Simon K. Warfield, Davood Karimi, Ali Gholipour, 2020, ArXiv.

Multimodale nicht-rigide Registrierung von Ultraschall und MR-Bilddaten unter Verwendung eines biomechanischen Modells

Carl-Fredrik Westin, Ron Kikinis, Simon K. Warfield, 2002, Bildverarbeitung für die Medizin.

Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure

Simon K. Warfield, Simone Vantini, Olivier Commowick, 2016, MICCAI.

Reliable Assessment of Perfusivity and Diffusivity from Diffusion Imaging of the Body

Simon K. Warfield, Moti Freiman, Jeannette M. Perez-Rossello, 2012, MICCAI.

Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information

Simon K. Warfield, Alireza Akhondi Asl, Sai Subrahmanyam Gorthi, 2015, IEEE Journal of Biomedical and Health Informatics.

Calibrated Diffusion Tensor Estimation pdf

Simon K. Warfield, Davood Karimi, Ali Gholipour, 2021, ArXiv.

Deep learning-based parameter estimation in fetal diffusion-weighted MRI

Simon K. Warfield, Davood Karimi, Ali Gholipour, 2021, NeuroImage.

Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI

Simon K. Warfield, Davood Karimi, Ali Gholipour, 2021, NeuroImage.

MRI Super-Resolution Through Generative Degradation Learning

Simon K. Warfield, Onur Afacan, Yao Sui, 2021, MICCAI.

Regional white matter microstructure in very preterm infants: Predictors and 7 year outcomes

Gary F. Egan, Simon K. Warfield, Deanne K. Thompson, 2014, Cortex.

Passive fMRI mapping of language function for pediatric epilepsy surgical planning: Validation using Wada, ECS, and FMAER

Simon K. Warfield, Vahid Taimouri, Ralph O. Suarez, 2014, Epilepsy Research.

Unbiased group-wise alignment by iterative central tendency estimations

Simon K. Warfield, Benoît Macq, Philippe Salembier, 2008 .

Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND)

Simon K. Warfield, Benoit Scherrer, Sanjay P. Prabhu, 2013, MICCAI.

Loss of White Matter Microstructural Integrity Is Associated with Adverse Neurological Outcome in Tuberous Sclerosis Complex (S28.003)

Simon K. Warfield, Benoit Scherrer, Jurriaan M. Peters, 2012 .

Super-resolution Reconstruction of Fetal Brain MRI

Simon K. Warfield, Ali Gholipour, S. Warfield, 2009 .

5 – Intraoperative Visualization

Nobuhiko Hata, Ron Kikinis, William M. Wells, 2000 .

Laboratory Investigation:Automatic Identification of Gray Matter Structures from MRI to Improve the Segmentation of White Matter Lesions

Ron Kikinis, William M. Wells, Simon K. Warfield, 1995 .

Segmentation of Knee Images: A Grand Challenge

Simon K. Warfield, Marc Niethammer, Tobias Heimann, 2010 .

An MRI study of age-related white and gray matter volume changes in the rhesus monkey

Douglas L. Rosene, Simon K. Warfield, Charles R. G. Guttmann, 2008, Neurobiology of Aging.

Biomechanical Modelling of the Brain for Neuronavigation in Epilepsy Surgery

Karol Miller, Simon K. Warfield, Adam Wittek, 2019, Biomechanics of the Brain.

Localization of the Epileptogenic Foci in Tuberous Sclerosis Complex: A Pediatric Case Report

Simon K. Warfield, Jens Haueisen, Yoshio Okada, 2014, Front. Hum. Neurosci..

Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL‐FIRST

Simon K. Warfield, Aymeric Stamm, S. Warfield, 2018, Journal of neuroimaging : official journal of the American Society of Neuroimaging.

Increasing the resolution of diffusion-weighted MRI with distortion compensated orthogonal acquisitions and super-resolution reconstruction

Simon K. Warfield, Benoit Scherrer, Ali Gholipour, 2011 .

Simultaneous Alignment and Central Tendency Estimation for Brain Atlas Construction

Simon K. Warfield, Neil I. Weisenfeld, 2007 .

New Insights in Perinatal Arterial Ischemic Stroke by Assessing Brain Perfusion

Simon K. Warfield, Pia Wintermark, 2011, Translational Stroke Research.

Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations

Kemal Tuncali, Simon K. Warfield, Stuart G. Silverman, 2005 .

Three-dimensional Optical Flow Method for Measurement of Volumetric Brain Deformation from Intraoperative Magnetic Resonance Images

Nobuhiko Hata, Ron Kikinis, Simon K. Warfield, 2000 .

Biomechanical modeling provides more accurate data for neuronavigation than rigid registration

Karol Miller, Ron Kikinis, Simon K. Warfield, 2014 .

Tracking Volumetric Brain Deformation During Image Guided Neurosurgery

Ron Kikinis, Simon K. Warfield, Ferenc A. Jolesz, 2001 .