Brent M. Znosko

发表

RNA CoSSMos: Characterization of Secondary Structure Motifs—a searchable database of secondary structure motifs in RNA three-dimensional structures

Pamela L. Vanegas, Graham A. Hudson, Amber R. Davis, 2011, Nucleic Acids Res..

The tandem, Face-to-Face AP Pairs in 5'(rGGCAPGCCU)2

Brent M. Znosko, Mark E. Burkard, Thomas R. Krugh, 2002 .

Analysis of secondary structural elements in human microRNA hairpin precursors

Dan Wang, Brent M. Znosko, Steven M. Gallo, 2016, BMC Bioinformatics.

Structural features and thermodynamics of the J4/5 loop from the Candida albicans and Candida dubliniensis group I introns.

Brent M. Znosko, D. Turner, S. Kennedy, 2004, Biochemistry.

Thermodynamic characterization of RNA triloops.

Brent M. Znosko, P. Thulasi, L. Pandya, 2010, Biochemistry.

Predicting DNA–intercalator binding: the development of an arene–arene stacking parameter from SAPT analysis of benzene-substituted benzene complexes

Graham A. Hudson, Brent M. Znosko, Yi Ren, 2013 .

Effect of intercalator substituent and nucleotide sequence on the stability of DNA- and RNA-naphthalimide complexes.

Graham A. Hudson, Brent M. Znosko, Yi Ren, 2015, Bioorganic & medicinal chemistry.

Thermodynamic characterization of tandem mismatches found in naturally occurring RNA

Brent M. Znosko, Martha E. Christiansen, 2009, Nucleic acids research.

Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.

Brent M. Znosko, D. Turner, D. Mathews, 2018, Biochemistry.

Predictions and analyses of RNA nearest neighbor parameters for modified nucleotides

Brent M. Znosko, Charles C. Kirkpatrick, Melissa C Hopfinger, 2020, Nucleic acids research.

Structural characterization of naturally occurring RNA single mismatches

Amber R. Davis, Brent M. Znosko, Charles C. Kirkpatrick, 2010, Nucleic acids research.

Positional and neighboring base pair effects on the thermodynamic stability of RNA single mismatches.

Amber R. Davis, Brent M. Znosko, 2010, Biochemistry.

Effect of sodium ions on RNA duplex stability.

Brent M. Znosko, Zexiang Chen, 2013, Biochemistry.

The effects of varying the substituent and DNA sequence on the stability of 4-substituted DNA-naphthalimide complexes.

Brent M. Znosko, Yi Ren, L. K. Hardebeck, 2018, Biophysical chemistry.

A Computational Model for Predicting Experimental RNA Nearest-Neighbor Free Energy Rankings: Inosine•Uridine Pairs.

Brent M. Znosko, Michael Lewis, Elizabeth A. Jolley, 2015, Chemical physics letters.

Stability of RNA duplexes containing inosine·cytosine pairs

Brent M. Znosko, Daniel J Wright, Christopher R Force, 2018, Nucleic acids research.

The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide

Brent M. Znosko, Elizabeth A. Jolley, 2016, Nucleic acids research.

A Guanosine-Centric Mechanism for RNA Chaperone Function

Brent M. Znosko, K. Weeks, J. Lieb, 2013, Science.

Identification and characterization of RNA pentaloop sequence families

Brent M. Znosko, Charles C. Kirkpatrick, MdSharear Saon, 2023, NAR genomics and bioinformatics.

Contribution of 3'T and 3'TT overhangs to the thermodynamic stability of model siRNA duplexes.

Brent M. Znosko, A. Pasternak, Jolanta Lisowiec‐Wachnicka, 2019, Biophysical chemistry.

Replacing salt correction factors with optimized RNA nearest-neighbour enthalpy and entropy parameters.

Brent M. Znosko, G. Weber, Elizabeth A. Jolley, 2019, Chemical physics.

Thermodynamic characterization and nearest neighbor parameters for RNA duplexes under molecular crowding conditions

Brent M. Znosko, Miranda S Adams, 2019, Nucleic acids research.

Thermodynamic characterization of naturally occurring RNA single mismatches with G-U nearest neighbors.

Amber R. Davis, Brent M. Znosko, 2008, Biochemistry.

Solution structure of the HIV-1 exon splicing silencer 3.

Brent M. Znosko, Jeffrey D Levengood, Charles A. Johnson, 2011, Journal of molecular biology.

Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides

Graham A. Hudson, Brent M. Znosko, Richard Bloomingdale, 2013, RNA.

Identification and Characterization of New RNA Tetraloop Sequence Families.

Brent M. Znosko, D. Gohara, Charles C. Kirkpatrick, 2019, Biochemistry.

Thermodynamic parameters for an expanded nearest-neighbor model for the formation of RNA duplexes with single nucleotide bulges.

Brent M. Znosko, Brent M Znosko, M. Serra, 2002, Biochemistry.

Thermodynamic characterization of naturally occurring RNA pentaloops

Brent M. Znosko, Md. Sharear Saon, 2022, RNA: A publication of the RNA Society.

Thermodynamic characterization of naturally occurring RNA tetraloops.

Amber R. Davis, Brent M. Znosko, Brent M Znosko, 2010, RNA.

Thermodynamic characterization of the complete set of sequence symmetric tandem mismatches in RNA and an improved model for predicting the free energy contribution of sequence asymmetric tandem mismatches.

Brent M. Znosko, Martha E. Christiansen, 2008, Biochemistry.

Thermodynamic characterization of single mismatches found in naturally occurring RNA.

Amber R. Davis, Brent M. Znosko, Brent M Znosko, 2007, Biochemistry.

Nearest neighbor parameters for inosine x uridine pairs in RNA duplexes.

Brent M. Znosko, Brent M Znosko, Daniel J Wright, 2007, Biochemistry.

Factors affecting thermodynamic stabilities of RNA 3 x 3 internal loops.

Brent M. Znosko, Brent M Znosko, Douglas H Turner, 2004, Biochemistry.

RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures

Brent M. Znosko, Katherine E Richardson, Charles C Kirkpatrick, 2020, Database J. Biol. Databases Curation.

MeltR software provides facile determination of nucleic acid thermodynamics.

Brent M. Znosko, P. Bevilacqua, Jacob P Sieg, 2023, Biophysics Reports.

Computational model for predicting experimental RNA and DNA nearest-neighbor free energy rankings.

Brent M. Znosko, Charles A. Johnson, Michael Lewis, 2011, The journal of physical chemistry. B.

The loss of a hydrogen bond: Thermodynamic contributions of a non-standard nucleotide.

Brent M. Znosko, Elizabeth A. Jolley, 2016, Nucleic acids research.

Solution structure of an RNA internal loop with three consecutive sheared GA pairs.

Brent M. Znosko, Brent M Znosko, Scott D Kennedy, 2005, Biochemistry.

Nearest-neighbor parameters for 7-deaza-adenosine·uridine base pairs in RNA duplexes

Brent M. Znosko, Katherine E Richardson, Brent M Znosko, 2016, RNA.