Joel Dudley

发表

Content-based microarray search using differential expression profiles

Russ B. Altman, Jesse M. Engreitz, Alexander A. Morgan, 2010, BMC Bioinformatics.

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

Joel Dudley, Krishna R. Kalari, Khader Shameer, 2016, Briefings Bioinform..

Deep Learning to Predict Patient Future Diseases from the Electronic Health Records

Li Li, Riccardo Miotto, Joel Dudley, 2016, ECIR.

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning

Rong Chen, Riccardo Miotto, Marcus A. Badgeley, 2017, Briefings Bioinform..

Exploiting drug-disease relationships for computational drug repositioning

Joel Dudley, Atul J. Butte, Tarangini Deshpande, 2011, Briefings Bioinform..

Application of I-COMO device towards geographic disease enrichment pattern revealed from electronic medical record at a large Urban academic medical center

Li Li, Joel Dudley, Matteo Danieletto, 2017, PervasiveHealth.

Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders

Li Li, Rong Chen, Benjamin S. Glicksberg, 2018, PSB.

A Quick Guide for Developing Effective Bioinformatics Programming Skills

Joel Dudley, Atul J. Butte, A. Butte, 2009, PLoS Comput. Biol..

Cell-specific prediction and application of drug-induced gene expression profiles

Jianying Hu, Joel Dudley, Fei Wang, 2017, PSB.

An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships

Li Li, Rong Chen, Benjamin S. Glicksberg, 2014, Pacific Symposium on Biocomputing.

An integrative method for scoring candidate genes from association studies: application to warfarin dosing

Russ B. Altman, Joel Dudley, Atul J. Butte, 2010, BMC Bioinformatics.

Using SNOMED CT For Translational Genomics Data Integration

Joel Dudley, Atul J. Butte, David P. Chen, 2008, KR-MED.

Prioritizing Small Molecule as Candidates for Drug Repositioning using Machine Learning

Kipp W. Johnson, Benjamin S. Glicksberg, Joel Dudley, 2018, bioRxiv.

TimeTree: a public knowledge-base of divergence times among organisms

Joel Dudley, Sudhir Kumar, S. Blair Hedges, 2006, Bioinform..

Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort

Li Li, Riccardo Miotto, Kipp W. Johnson, 2017, PSB.

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis

Marcus A. Badgeley, Benjamin S. Glicksberg, Joel Dudley, 2018, Bioinform..

Automatic processing of Electronic Medical Records using Deep Learning

Oscar Mayora-Ibarra, Benjamin S. Glicksberg, Joel Dudley, 2018, PervasiveHealth.

Latent physiological factors of complex human diseases revealed by independent component analysis of clinarrays

Joel Dudley, Atul J. Butte, David P. Chen, 2010, BMC Bioinformatics.

Comparison of automated and human assignment of MeSH terms on publicly-available molecular datasets

Joel Dudley, Atul J. Butte, Vijay Krishnan, 2011, J. Biomed. Informatics.

Healthcare Data Mining with Matrix Models

Ping Zhang, Fei Wang, Joel Dudley, 2016, KDD.

Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula

Kipp W. Johnson, Benjamin S. Glicksberg, Joel Dudley, 2018, PSB.

Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining

Joel Dudley, Atul J. Butte, A. Butte, 2007, Pacific Symposium on Biocomputing.

Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases

Joel Dudley, Rong Chen, Atul J. Butte, 2012, PLoS Comput. Biol..

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions

Li Li, Alexander A. Morgan, Joel Dudley, 2010, PLoS Comput. Biol..

Deep learning for healthcare: review, opportunities and challenges

Fei Wang, Xiaoqian Jiang, Riccardo Miotto, 2018, Briefings Bioinform..

Exploring the Reproducibility of Probabilistic Causal Molecular Network Models>

Rui Chang, Jun Zhu, Joel Dudley, 2017, PSB.

Automated cell type discovery and classification through knowledge transfer

Joel Dudley, Brian A. Kidd, Hao-Chih Lee, 2017, Bioinform..

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

Joel Dudley, Sudhir Kumar, Masatoshi Nei, 2008, Briefings Bioinform..

Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams

Riccardo Miotto, Marcus A. Badgeley, Benjamin S. Glicksberg, 2016, Briefings Bioinform..

Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables

Kipp W. Johnson, Jessica K. De Freitas, Benjamin S. Glicksberg, 2018, PSB.

Bioinformatics software for biologists in the genomics era

Joel Dudley, Sudhir Kumar, J. Dudley, 2007, Bioinform..

Uncovering exposures responsible for birth season – disease effects: a global study

Li Li, Phung Anh Nguyen, Yu-Chuan Li, 2017, J. Am. Medical Informatics Assoc..

Processing of Electronic Health Records using Deep Learning: A review pdf

Oscar Mayora-Ibarra, Benjamin S. Glicksberg, Joel Dudley, 2018, ArXiv.

ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression

Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, 2011, Bioinform..

Matching Cancer Genomes to Established Cell Lines for Personalized Oncology

Joel Dudley, Rong Chen, Atul J. Butte, 2011, Pacific Symposium on Biocomputing.

Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks

Li Li, Rong Chen, Marcus A. Badgeley, 2016, Bioinform..

Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining

Li Li, Kipp W. Johnson, Benjamin S. Glicksberg, 2018, BMC Medical Informatics and Decision Making.

Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age

Benjamin S. Glicksberg, Joel Dudley, Li Li, 2017, J. Biomed. Informatics.

Deep representation learning of electronic health records to unlock patient stratification at scale

Cesare Furlanello, Riccardo Miotto, Benjamin S. Glicksberg, 2020, npj Digital Medicine.

Automated disease cohort selection using word embeddings from Electronic Health Records

Li Li, Rong Chen, Riccardo Miotto, 2018, PSB.

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

Joel Dudley, Rong Chen, Atul J. Butte, 2010, PLoS Comput. Biol..

Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine

Russ B. Altman, Joel Dudley, Nicholas P. Tatonetti, 2011, Pacific Symposium on Biocomputing.

Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology

Joel Dudley, Atul J. Butte, A. Butte, 2008, Pacific Symposium on Biocomputing.