Mark Yandell

发表

Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes

Chris Smith, Chris Mungall, Gerald M. Rubin, 2006, PLoS Comput. Biol..

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

Daniel Nilsson, Peter Szolovits, Karen Eilbeck, 2014, Genome Biology.

ImagePlane: An Automated Image Analysis Pipeline for High-Throughput Screens Using the Planarian Schmidtea mediterranea

Mark Yandell, Steven Flygare, Michael Campbell, 2013, J. Comput. Biol..

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Mark Yandell, Carson Holt, M. Yandell, 2011, BMC Bioinformatics.

The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool

Karen Eilbeck, Hao Hu, Mark Yandell, 2018, BMC Bioinformatics.

Using VAAST to Identify Disease‐Associated Variants in Next‐Generation Sequencing Data

Mark Yandell, Hao Hu, Martin G Reese, 2014, Current protocols in human genetics.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

Le-Shin Wu, Guillaume Marçais, Mark Yandell, 2014, Genome Biology.

Predicting gene structure changes resulting from genetic variants via exon definition features

Mark Yandell, William H. Majoros, Doreen Ware, 2018, Bioinform..

The Celera Discovery SystemTM

Peter Li, Richard J. Mural, Mark Yandell, 2002, Nucleic Acids Res..

Wham: Identifying Structural Variants of Biological Consequence

Mark Yandell, Zev N. Kronenberg, Michael D. Shapiro, 2015, PLoS Comput. Biol..

BLAST - an essential guide to the basic local alignment search tool

Ian Korf, Mark Yandell, Joseph A. Bedell, 2003 .

Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins

Chris Mungall, Fidel Salas, Mark Yandell, 2008, PLoS Comput. Biol..

Quantitative measures for the management and comparison of annotated genomes

Karen Eilbeck, Mark Yandell, Barry Moore, 2009, BMC Bioinformatics.

High‐throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE

Mark Yandell, William H. Majoros, Doreen Ware, 2016, Bioinform..

Identification of key concepts in biomedical literature using a modified Markov heuristic

Mark Yandell, William H. Majoros, G. M. Subramanian, 2003, Bioinform..

Draft genome of the red harvester ant Pogonomyrmex barbatus

Brian R. Johnson, Dan Graur, Christine G. Elsik, 2011, Proceedings of the National Academy of Sciences.

Massively parallel sequencing identifies a previously unrecognized X-linked disorder resulting in lethality in male infants owing to amino-terminal acetyltransferase deficiency

Mark Yandell, Jinchuan Xing, Leslie G Biesecker, 2011, Genome Biology.

Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster

Peer Bork, Ewan Birney, Ivica Letunic, 2002, Science.

A standard variation file format for human genome sequences

Karen Eilbeck, Paul Flicek, Fiona Cunningham, 2010, Genome Biology.

Combined Proteomic and Transcriptomic Interrogation of the Venom Gland of Conus geographus Uncovers Novel Components and Functional Compartmentalization*

Mark Yandell, Anthony W. Purcell, Pradip K. Bandyopadhyay, 2014, Molecular & Cellular Proteomics.

Global analysis of disease-related DNA sequence variation in 10 healthy individuals: Implications for whole genome-based clinical diagnostics

Mark Yandell, Martin G Reese, Barry Moore, 2011, Genetics in Medicine.

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.

Mark Yandell, Gerald M Rubin, Susan E Celniker, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Marth, G.T. et al. A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23, 452-456

Mark Yandell, Gabor T. Marth, Warren Gish, 2000 .

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

Jian Wang, Eugene W. Myers, Andrew G. Clark, 2002, Science.

The African coelacanth genome provides insights into tetrapod evolution

Eric S. Lander, Sonja J. Prohaska, Peter F. Stadler, 2013 .

Genomic signatures of evolutionary transitions from solitary to group living

Matthew E. Hudson, Evgeny M. Zdobnov, Daniel Hamacher, 2015, Science.

Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes1[OPEN]

Jikai Lei, Yanni Sun, Mark Yandell, 2014, Plant Physiology.

A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data

Gustavo Glusman, Paul Scheet, Mark Yandell, 2014, Nature Biotechnology.

Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications.

Ying Liu, Wei Wang, Mark Yandell, 2011, Discovery medicine.

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

Bernard Henrissat, Marco Thines, Mark Yandell, 2010, Genome Biology.

Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands

Yufeng Shen, Alessandro Giardini, Hongyu Zhao, 2017, Nature Genetics.

Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade

F. W. Smith, Bob Goldstein, Mark Yandell, 2015, Proceedings of the National Academy of Sciences.

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

Mark Yandell, Carson Holt, David B Neale, 2010, BMC Genomics.

Exome analysis of a family with Wolff–Parkinson–White syndrome identifies a novel disease locus

Mark Yandell, H Joseph Yost, Brett J. Kennedy, 2015, American journal of medical genetics. Part A.

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

Mark Yandell, Carl Baker, Carson Holt, 2018, Nature Genetics.

Epistatic and Combinatorial Effects of Pigmentary Gene Mutations in the Domestic Pigeon

Mark Yandell, Sancy A. Leachman, Eric T. Domyan, 2014, Current Biology.

VAAST 2.0: Improved Variant Classification and Disease-Gene Identification Using a Conservation-Controlled Amino Acid Substitution Matrix

Mark Yandell, Martin G Reese, Steven Flygare, 2013, Genetic epidemiology.

Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon

Jun Wang, Hao Tan, Mark Yandell, 2013, Science.

Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling

Shawn Rynearson, Karen Eilbeck, Andrew Pavia, 2016, Genome Biology.

Transposable element islands facilitate adaptation to novel environments in an invasive species

Jürgen Gadau, Mark Yandell, Carsten Kemena, 2014, Nature Communications.

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)

Brian R. Johnson, James A. Yorke, Dan Graur, 2011, Proceedings of the National Academy of Sciences.