Eduardo Castro-Nallar

Evaluation of computational methods for human microbiome analysis using simulated data

Keith A. Crandall, W. Evan Johnson, Sandro L. Valenzuela, 2020, PeerJ.

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

Gary Benson, William Johnson, Keith A. Crandall, 2014, BMC Bioinformatics.

PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Changjin Hong, Keith A Crandall, Solaiappan Manimaran, 2014, Microbiome.

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Quinn Snell, Changjin Hong, Keith A Crandall, 2013, Genome research.

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.

Raja Mazumder, Keith A Crandall, Vahan Simonyan, 2014, Genomics.

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

Gunnar Rätsch, Emmanuel Dias-Neto, Niranjan Nagarajan, 2019, bioRxiv.