Jaques Reifman

发表

Predicting human subcutaneous glucose concentration in real time: A universal data-driven approach

Yinghui Lu, Srinivasan Rajaraman, W. Kenneth Ward, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

PC-PVT: A platform for psychomotor vigilance task testing, analysis, and prediction

Srinivasan Rajaraman, Jaques Reifman, Maxim Y. Khitrov, 2013, Behavior research methods.

Large-Scale Orthology Predictions for Inferring Gene Functions across Multiple Species

Jaques Reifman, Chenggang Yu, Valmik Desai, 2010, 2010 DoD High Performance Computing Modernization Program Users Group Conference.

Parallel Implementation of a Bioinformatics Pipeline for the Design of Pathogen Diagnostic Assays

Jaques Reifman, Nela Zavaljevski, Ravi Vijaya Satya, 2009, 2009 DoD High Performance Computing Modernization Program Users Group Conference.

Error bounds for data-driven models of dynamical systems

Jaques Reifman, Andrei V. Gribok, Nicholas O. Oleng', 2007, Comput. Biol. Medicine.

A Robust Method to Estimate Instantaneous Heart Rate from Noisy Electrocardiogram Waveforms

Jaques Reifman, Andrei V. Gribok, Xiaoxiao Chen, 2011, Annals of Biomedical Engineering.

Combat medical informatics: present and future

Mark J. Buller, Reed W. Hoyt, Jaques Reifman, 2002, AMIA.

Caffeine dosing strategies to optimize alertness during sleep loss

Jaques Reifman, Sridhar Ramakrishnan, Francisco G Vital-Lopez, 2018, Journal of sleep research.

A Unified Model of Performance: Validation of its Predictions across Different Sleep/Wake Schedules.

Jaques Reifman, Sridhar Ramakrishnan, Thomas J Balkin, 2016, Sleep.

Bridging the gap between gene expression and metabolic phenotype via kinetic models

Jaques Reifman, Anders Wallqvist, Francisco G. Vital-Lopez, 2013, BMC Systems Biology.

Software Tool for Analysis of Variance of DNA Microarray Data

Jaques Reifman, Purvesh Khatri, Dechang Chen, 2006 .

Application of Information Technology: A Method for Automatic Identification of Reliable Heart Rates Calculated from ECG and PPG Waveforms

Jaques Reifman, Chenggang Yu, Zhenqiu Liu, 2006, J. Am. Medical Informatics Assoc..

Untangling the Effect of Head Acceleration on Brain Responses to Blast Waves.

Jaques Reifman, Vineet Rakesh, Haojie Mao, 2015, Journal of biomechanical engineering.

exertional heat stress A virtual rat for simulating environmental and

Jaques Reifman, Vineet Rakesh, Jonathan D. Stallings, 2014 .

Modeling Phenotypic Metabolic Adaptations of Mycobacterium tuberculosis H37Rv under Hypoxia

Jaques Reifman, Xin Fang, Anders Wallqvist, 2012, PLoS Comput. Biol..

Life Sign Decision Support Algorithms

Reed W. Hoyt, Jaques Reifman, C. Thomas Savell, 2004, MedInfo.

A high-throughput pipeline for designing microarray-based pathogen diagnostic assays

Jaques Reifman, Nela Zavaljevski, Ravi Vijaya Satya, 2008, BMC Bioinformatics.

A systems biology framework for modeling metabolic enzyme inhibition of Mycobacterium tuberculosis

Jaques Reifman, Xin Fang, Anders Wallqvist, 2009, BMC Systems Biology.

Real‐time individualization of the unified model of performance

Jianbo Liu, Jaques Reifman, Srinivas Laxminarayan, 2017, Journal of sleep research.

Exploiting large-scale drug-protein interaction information for computational drug repurposing

Jaques Reifman, Ruifeng Liu, Anders Wallqvist, 2014, BMC Bioinformatics.

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity

Jaques Reifman, Anders Wallqvist, Joseph Ivanic, 2009, PLoS Comput. Biol..

Individualized estimation of human core body temperature using noninvasive measurements

Jaques Reifman, Srinivas Laxminarayan, Yoram Epstein, 2018, Journal of applied physiology.

Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase

Jaques Reifman, Jin Liu, Anders Wallqvist, 2012, PLoS Comput. Biol..

DBSecSys: a database of Burkholderia mallei secretion systems

Li Cheng, Jaques Reifman, Nela Zavaljevski, 2014, BMC Bioinformatics.

Reconstituting protein interaction networks using parameter-dependent domain-domain interactions

Jaques Reifman, Anders Wallqvist, Vesna Memievi, 2012, BMC Bioinformatics.

Genome‐wide enzyme annotation with precision control: Catalytic families (CatFam) databases

Jaques Reifman, Chenggang Yu, Valmik Desai, 2009, Proteins.

The matching of sinus arrhythmia to respiration: Are trauma patients without serious injury comparable to healthy laboratory subjects?

Jaques Reifman, Shwetha Edla, Xiaoxiao Chen, 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation

Jaques Reifman, Seth Johnson, Chenggang Yu, 2008, BMC Bioinformatics.

A unified mathematical model to quantify performance impairment for both chronic sleep restriction and total sleep deprivation.

Srinivasan Rajaraman, Jaques Reifman, David Thorsley, 2013, Journal of theoretical biology.

A Software Pipeline for Protein Structure Prediction

Jaques Reifman, Nela Zavaljevski, Paul Wilson, 2006 .

A strategy for evaluating pathway analysis methods

Jaques Reifman, Chenggang Yu, Anders Wallqvist, 2017, BMC Bioinformatics.

A high-throughput pipeline for the design of real-time PCR signatures

Jaques Reifman, Nela Zavaljevski, Ravi Vijaya Satya, 2010, BMC Bioinformatics.

Nonlinear programming with feedforward neural networks

Jaques Reifman, Earl E. Feldman, 1999, IJCNN'99. International Joint Conference on Neural Networks. Proceedings (Cat. No.99CH36339).

A Web-based High-Throughput Tool for Next-Generation Sequence Annotation

Jaques Reifman, Maxim Y. Khitrov, Chenggang Yu, 2011 .

Inferring high-confidence human protein-protein interactions

Jaques Reifman, Anders Wallqvist, Xueping Yu, 2012, BMC Bioinformatics.

Human Core Temperature Prediction for Heat-Injury Prevention

William J. Tharion, Mark J. Buller, Jaques Reifman, 2015, IEEE Journal of Biomedical and Health Informatics.

The Importance of Different Frequency Bands in Predicting Subcutaneous Glucose Concentration in Type 1 Diabetic Patients

Yinghui Lu, W. Kenneth Ward, Jaques Reifman, 2010, IEEE Transactions on Biomedical Engineering.

Signal trend identification with fuzzy methods

Xin Wang, Jaques Reifman, Lefteri H. Tsoukalas, 1999, Proceedings 11th International Conference on Tools with Artificial Intelligence.

Alternative methods for modeling fatigue and performance.

Jaques Reifman, 2004, Aviation, space, and environmental medicine.

Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms

Jaques Reifman, Nela Zavaljevski, Anders Wallqvist, 2015, PLoS Comput. Biol..

DOVIS 2.0: an efficient and easy to use parallel virtual screening tool based on AutoDock 4.0

Jaques Reifman, Xin Hu, Anders Wallqvist, 2008, Chemistry Central journal.

White Paper: Military Research Needs in Biomedical Informatics

Jaques Reifman, Lawrence M. Fagan, Richard M. Satava, 2002, J. Am. Medical Informatics Assoc..

Characteristics Sufficient fortheAssessment of Continual Patient Monitoring

Jaques Reifman, Liangyou Chen, Andrew T. Reisner, 2013 .

SNIT: SNP identification for strain typing

Jaques Reifman, Nela Zavaljevski, Ravi Vijaya Satya, 2011, Source Code for Biology and Medicine.

temperaturein the heat is limited by a critical internal

Jaques Reifman, P. A. Mason, Vineet Rakesh, 2013 .

DOVIS: an implementation for high-throughput virtual screening using AutoDock

Jaques Reifman, Xiaohui Jiang, Anders Wallqvist, 2008, BMC Bioinformatics.

Computational Identification of Mechanistic Factors That Determine the Timing and Intensity of the Inflammatory Response

Jaques Reifman, Alexander Yu. Mitrophanov, Sridevi Nagaraja, 2015, PLoS Comput. Biol..

Gene selection for multiclass prediction of microarray data

Jaques Reifman, Xiuzhen Cheng, Dechang Chen, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

PathNet: a tool for pathway analysis using topological information

Jaques Reifman, Anders Wallqvist, Bhaskar Dutta, 2012, Source Code for Biology and Medicine.

Algorithms to qualify respiratory data collected during the transport of trauma patients

Jaques Reifman, Liangyou Chen, Thomas McKenna, 2006, Physiological measurement.

Premature Saturation in Backpropagation Networks: Mechanism and Necessary Conditions

Jaques Reifman, Javier E. Vitela, J. Reifman, 1995, Neural Networks.

A comparison of alerting strategies for hemorrhage identification during prehospital emergency transport

Jianbo Liu, Jaques Reifman, Shwetha Edla, 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Multilayer perceptron for nonlinear programming

Jaques Reifman, Earl E. Feldman, 2002, Comput. Oper. Res..

A computational study of the respiratory airflow characteristics in normal and obstructed human airways

Jaques Reifman, Anders Wallqvist, Bora Sul, 2014, Comput. Biol. Medicine.

QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence

Li Cheng, Jaques Reifman, Chenggang Yu, 2011, BMC Bioinformatics.

The physiology analysis system: An integrated approach for warehousing, management and analysis of time-series physiology data

Jaques Reifman, Gagandeep Bawa, Kamal Kumar, 2007, Comput. Methods Programs Biomed..

Evidence of probabilistic behaviour in protein interaction networks

Jaques Reifman, Anders Wallqvist, Joseph Ivanic, 2008, BMC Systems Biology.

Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats

Jaques Reifman, Yanhong Liu, Purvesh Khatri, 2004, Pacific Symposium on Biocomputing.

Thermodynamic Basis for the Emergence of Genomes during Prebiotic Evolution

Jaques Reifman, Ravi Vijaya Satya, Hyung-June Woo, 2012, PLoS Comput. Biol..

A platform for testing and comparing of real-time decision-support algorithms in mobile environments

Jaques Reifman, Maxim Y. Khitrov, Kevin Montgomery, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems

Jaques Reifman, Nela Zavaljevski, Anders Wallqvist, 2016, BMC Bioinformatics.

Decision tool for the early diagnosis of trauma patient hypovolemia

Jaques Reifman, Andrei V. Gribok, Liangyou Chen, 2008, J. Biomed. Informatics.

Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines

Jaques Reifman, Rajkumar Bondugula, Xin Hu, 2010, Computing in Science & Engineering.

Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle

Jaques Reifman, Xin Fang, Ping Ye, 2016, BMC Systems Biology.

A Real-Time Algorithm for Predicting Core Temperature in Humans

Mark J. Buller, Reed W. Hoyt, Jaques Reifman, 2010, IEEE Transactions on Information Technology in Biomedicine.

An increase in sleep slow waves predicts better working memory performance in healthy individuals

Jaques Reifman, Sridhar Ramakrishnan, Fabio Ferrarelli, 2019, NeuroImage.

Systematic Construction of Qualitative Physics-Based Rules for Process Diagnostics

Jaques Reifman, Thomas Y. C. Wei, 1995, EPIA.

Predicting Subcutaneous Glucose Concentration in Humans: Data-Driven Glucose Modeling

Srinivasan Rajaraman, W. Kenneth Ward, Jaques Reifman, 2009, IEEE Transactions on Biomedical Engineering.

A platform for real-time acquisition and analysis of physiological data in hospital emergency departments

Jianbo Liu, Jaques Reifman, Shwetha Edla, 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Universal Glucose Models for Predicting Subcutaneous Glucose Concentration in Humans

Yinghui Lu, W. Kenneth Ward, Robert A. Vigersky, 2010, IEEE Transactions on Information Technology in Biomedicine.

Development and analysis of an in vivo-compatible metabolic network of Mycobacterium tuberculosis

Jaques Reifman, Xin Fang, Anders Wallqvist, 2010, BMC Systems Biology.

Probing the Extent of Randomness in Protein Interaction Networks

Jaques Reifman, Anders Wallqvist, Joseph Ivanic, 2008, PLoS Comput. Biol..

Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism

Jaques Reifman, Francisco G. Vital-Lopez, Anders Wallqvist, 2015, PLoS Comput. Biol..

Using confidence intervals to assess the reliability of instantaneous heart rate and respiratory rate

Jaques Reifman, Xiaoxiao Chen, Liangyou Chen, 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Classifying noisy protein sequence data: a case study of immunoglobulin light chains

Jaques Reifman, Chenggang Yu, Nela Zavaljevski, 2005, ISMB.

Individual Differences in Women During Walking Affect Tibial Response to Load Carriage: The Importance of Individualized Musculoskeletal Finite-Element Models

Jaques Reifman, Chun Xu, Ginu Unnikrishnan, 2020, IEEE Transactions on Biomedical Engineering.

Host Response to Environmental Hazards: Using Literature, Bioinformatics, and Computation to Derive Candidate Biomarkers of Toxic Industrial Chemical Exposure

Jaques Reifman, Anders Wallqvist, Jonathan D. Stallings, 2015 .

2B-Alert Web: An Open-Access Tool for Predicting the Effects of Sleep/Wake Schedules and Caffeine Consumption on Neurobehavioral Performance.

Jaques Reifman, Sridhar Ramakrishnan, Kamal Kumar, 2016, Sleep.

Hybrid approaches to physiologic modeling and prediction

Jaques Reifman, Nicholas O. Oleng', J. Reifman, 2005, SPIE Defense + Commercial Sensing.

ALTERNATIVE APPROACHES TO IMPROVE PHYSIOLOGICAL PREDICTIONS

Reed W. Hoyt, Jaques Reifman, Larry G. Berglund, 2006 .

Sequence analysis Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays

Gary Benson, Jaques Reifman, Nela Zavaljevski, 2006 .

Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions

Jaques Reifman, Nela Zavaljevski, Fred J. Stevens, 2002, Bioinform..

An Innovative Fuzzy-Logic-Based Methodology for Trend Identification

Jaques Reifman, Lefteri H. Tsoukalas, Xin Wang, 2001 .

Individualized performance prediction during total sleep deprivation: Accounting for trait vulnerability to sleep loss

Jaques Reifman, Sridhar Ramakrishnan, Nancy J. Wesensten, 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Individualized Short-Term Core Temperature Prediction in Humans Using Biomathematical Models

Mark J. Buller, Jaques Reifman, Andrei V. Gribok, 2008, IEEE Transactions on Biomedical Engineering.

Challenges of Electronic Medical Surveillance Systems

Jaques Reifman, Gary R. Gilbert, David M. Lam, 2004 .

Data-driven prediction of adverse drug reactions induced by drug-drug interactions

Jaques Reifman, Ruifeng Liu, Anders Wallqvist, 2017, BMC Pharmacology and Toxicology.

Predictive Monitoring for Improved Management of Glucose Levels

Srinivasan Rajaraman, Jaques Reifman, Andrei Gribok, 2007, Journal of diabetes science and technology.

A quantitative quasispecies theory-based model of virus escape mutation under immune selection

Jaques Reifman, J. Reifman, H. Woo, 2012, Proceedings of the National Academy of Sciences.

Unraveling the conundrum of seemingly discordant protein-protein interaction datasets

Jaques Reifman, Anders Wallqvist, Rajkumar Bondugula, 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

Mathematical Modeling Research to Support the Development of Automated Insulin-Delivery Systems

Jaques Reifman, J. Reifman, G. Steil, 2009, Journal of diabetes science and technology.

Systems biology approaches for discovering biomarkers for traumatic brain injury.

Jaques Reifman, Chenggang Yu, Bhaskar Dutta, 2013, Journal of neurotrauma.

Are Standard Diagnostic Test Characteristics Sufficient for the Assessment of Continual Patient Monitoring?

Jaques Reifman, Liangyou Chen, Andrew T. Reisner, 2013, Medical decision making : an international journal of the Society for Medical Decision Making.

Update on Mathematical Modeling Research to Support the Development of Automated Insulin Delivery Systems

Jaques Reifman, J. Reifman, G. Steil, 2010, Journal of diabetes science and technology.

Mathematical Modeling of the Heat-Shock Response in HeLa Cells

Jaques Reifman, Jeremy D. Scheff, Vineet Rakesh, 2015, Biophysical journal.

Individualized performance prediction of sleep-deprived individuals with the two-process model.

Srinivasan Rajaraman, Jaques Reifman, Thomas J Balkin, 2008, Journal of applied physiology.

Use of a Food and Drug Administration-Approved Type 1 Diabetes Mellitus Simulator to Evaluate and Optimize a Proportional-Integral-Derivative Controller

Jaques Reifman, Srinivas Laxminarayan, J. Reifman, 2012, Journal of diabetes science and technology.

Categorizing Biases in High-Confidence High-Throughput Protein-Protein Interaction Data Sets*

Jaques Reifman, Anders Wallqvist, Vesna Memišević, 2011, Molecular & Cellular Proteomics.

CAN WE IMPROVE THE CLINICAL UTILITY OF RESPIRATORY RATE AS A MONITORED VITAL SIGN?

Jaques Reifman, Liangyou Chen, Andrei Gribok, 2009, Shock.

AGeS: A Software System for Microbial Genome Sequence Annotation

Jaques Reifman, Chenggang Yu, Valmik Desai, 2011, PloS one.

The association between vital signs and major hemorrhagic injury is significantly improved after controlling for sources of measurement variability.

Jaques Reifman, Liangyou Chen, Liangyou Chen, 2012, Journal of critical care.

Modeling synergistic drug inhibition of Mycobacterium tuberculosis growth in murine macrophages.

Jaques Reifman, Anders Wallqvist, Xin Fang, 2011, Molecular bioSystems.

Modeling metabolism and stage-specific growth of Plasmodium falciparum HB3 during the intraerythrocytic developmental cycle.

Jaques Reifman, Anders Wallqvist, Xin Fang, 2014, Molecular bioSystems.

PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Jaques Reifman, Valmik Desai, Nela Zavaljevski, 2009, PloS one.

Muscle Oxygen Saturation Improves Diagnostic Association Between Initial Vital Signs and Major Hemorrhage: A Prospective Observational Study

Jaques Reifman, Shwetha Edla, Jill E. Thorsen, 2016, Academic emergency medicine : official journal of the Society for Academic Emergency Medicine.

An improved methodology for individualized performance prediction of sleep-deprived individuals with the two-process model.

Srinivasan Rajaraman, Jaques Reifman, Thomas J Balkin, 2009, Sleep.

Exploration of Prehospital Vital Sign Trends for the Prediction of Trauma Outcomes

Jaques Reifman, Liangyou Chen, Andrei Gribok, 2009, Prehospital emergency care : official journal of the National Association of EMS Physicians and the National Association of State EMS Directors.

In silico microarray probe design for diagnosis of multiple pathogens

Jaques Reifman, Nela Zavaljevski, Jeanne Geyer, 2008, BMC Genomics.

An Integrated Musculoskeletal-Finite-Element Model to Evaluate Effects of Load Carriage on the Tibia During Walking.

Jaques Reifman, Vineet Rakesh, Ginu Unnikrishnan, 2016, Journal of biomechanical engineering.

Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors

Jaques Reifman, Chenggang Yu, Nela Zavaljevski, 2015, BMC Genomics.

Automatically-computed prehospital severity scores are equivalent to scores based on medic documentation.

Jaques Reifman, Liangyou Chen, Liangyou Chen, 2008, The Journal of trauma.