Pinak Chakrabarti

发表

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2010, BMC Bioinformatics.

Cavities and Atomic Packing in Protein Structures and Interfaces

Pinak Chakrabarti, Shrihari Sonavane, P. Chakrabarti, 2008, PLoS Comput. Biol..

Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2009, J. Comput. Aided Mol. Des..

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2007, Bioinform..

Prediction of Active Site Cleft Using Support Vector Machines

Pinak Chakrabarti, Shrihari Sonavane, P. Chakrabarti, 2010, J. Chem. Inf. Model..

Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display

Pinak Chakrabarti, Ranjit Prasad Bahadur, Arumay Pal, 2009, BMC Bioinformatics.

On residues in the disallowed region of the Ramachandran map.

Pinak Chakrabarti, Debnath Pal, D. Pal, 2002, Biopolymers.

Dissection, residue conservation, and structural classification of protein‐DNA interfaces

Pinak Chakrabarti, Mainak Guharoy, P. Chakrabarti, 2009, Proteins.

PRICE (PRotein Interface Conservation and Energetics): a server for the analysis of protein–protein interfaces

Pinak Chakrabarti, Mainak Guharoy, Arumay Pal, 2011, Journal of Structural and Functional Genomics.

Peptide segments in protein-protein interfaces

Pinak Chakrabarti, Joël Janin, Francis Rodier, 2007, Journal of Biosciences.

Variants of 310‐helices in proteins

Pinak Chakrabarti, Lipika Pal, P. Chakrabarti, 2002 .

Macromolecular recognition in the Protein Data Bank

Pinak Chakrabarti, Joël Janin, Francis Rodier, 2006, Acta crystallographica. Section D, Biological crystallography.

Aromatic-aromatic interactions in and around α-helices

Pinak Chakrabarti, U. Samanta, P. Chakrabarti, 2002 .

Interaction geometry involving planar groups in protein–protein interfaces

Pinak Chakrabarti, P. Chakrabarti, R. P. Saha, 2007, Proteins.

Discriminating the native structure from decoys using scoring functions based on the residue packing in globular proteins

Pinak Chakrabarti, Ranjit Prasad Bahadur, R. Bahadur, 2009, BMC Structural Biology.

Quantifying the accessible surface area of protein residues in their local environment.

Pinak Chakrabarti, R. Bahadur, U. Samanta, 2002, Protein engineering.

Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.

Pinak Chakrabarti, Ranjit Prasad Bahadur, R. Bahadur, 2005, Journal of proteome research.

Expanded turn conformations: Characterization and sequence‐structure correspondence in α‐turns with implications in helix folding

Pinak Chakrabarti, Lipika Pal, Bhaskar Dasgupta, 2004, Proteins.

IntGeom: A Server for the Calculation of the Interaction Geometry between Planar Groups in Proteins

Pinak Chakrabarti, Saptarshi Mandal, Arumay Pal, 2009 .

The subunit interfaces of weakly associated homodimeric proteins.

Pinak Chakrabarti, Joël Janin, Arumay Pal, 2010, Journal of molecular biology.

Disulfide bonds, their stereospecific environment and conservation in protein structures.

Pinak Chakrabarti, Debnath Pal, D. Pal, 2004, Protein engineering, design & selection : PEDS.

Cavities in protein–DNA and protein–RNA interfaces

Pinak Chakrabarti, Shrihari Sonavane, P. Chakrabarti, 2009, Nucleic acids research.

Hydration of protein–protein interfaces

Pinak Chakrabarti, Joël Janin, Francis Rodier, 2005, Proteins.

C—H⋯O hydrogen bond involving proline residues in α-helices

Pinak Chakrabarti, P. Chakrabarti, Sarmistha Chakrabarti, 1998 .

Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters

Pinak Chakrabarti, Shrihari Sonavane, Mainak Guharoy, 2012, Nucleic acids research.

Parity in the number of atoms in residue composition in proteins and contact preferences

Pinak Chakrabarti, P. Chakrabarti, R. P. Saha, 2006 .

Aromatic-aromatic interactions in and around alpha-helices.

Pinak Chakrabarti, U. Samanta, P. Chakrabarti, 2002, Protein engineering.