John Gordon Burleigh

发表

A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants

Pankaj Jaiswal, Hong Cui, Lorena Endara, 2018, ICBO.

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

Tamer Kahveci, Avinash Ramu, John Gordon Burleigh, 2012, BMC Bioinformatics.

Robinson-Foulds Supertrees

David Fernández-Baca, Oliver Eulenstein, Mukul S. Bansal, 2010, Algorithms for Molecular Biology.

Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis pdf

David Fernández-Baca, John Gordon Burleigh, Ruchi Chaudhary, 2015, AlCoB.

Algorithms for Rapid Error Correction for the Gene Duplication Problem

Oliver Eulenstein, John Gordon Burleigh, Ruchi Chaudhary, 2011, ISBRA.

Locating Multiple Gene Duplications through Reconciled Trees

Oliver Eulenstein, Mukul S. Bansal, John Gordon Burleigh, 2008, RECOMB.

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance

David Fernández-Baca, John Gordon Burleigh, Ruchi Chaudhary, 2012, Algorithms for Molecular Biology.

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

Oliver Eulenstein, Mukul S. Bansal, John Gordon Burleigh, 2010, BMC Bioinformatics.

An ILP solution for the gene duplication problem

David Fernández-Baca, Oliver Eulenstein, John Gordon Burleigh, 2011, BMC Bioinformatics.

Stability analysis of phylogenetic trees

Sanjay Ranka, Tamer Kahveci, Saad I. Sheikh, 2013, Bioinform..

Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction

Tamer Kahveci, John Gordon Burleigh, Rasha Elhesha, 2014, BCB.

Consensus properties for the deep coalescence problem and their application for scalable tree search

Oliver Eulenstein, John Gordon Burleigh, Harris T. Lin, 2012, BMC Bioinformatics.

Inferring species trees from gene duplication episodes

Oliver Eulenstein, Todd J. Vision, Mukul S. Bansal, 2010, BCB '10.

Triplet-Supertrees constructed from Minimum Triplet Presentations

Oliver Eulenstein, John Gordon Burleigh, Max Homilius, 2010, BICoB.

Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants

Oliver Eulenstein, Mukul S. Bansal, John Gordon Burleigh, 2009, J. Comput. Biol..

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses

Oliver Eulenstein, Pawel Górecki, John Gordon Burleigh, 2011, BMC Bioinformatics.

Algorithms for Knowledge-Enhanced Supertrees

Oliver Eulenstein, John Gordon Burleigh, André Wehe, 2012, ISBRA.

MulRF: a software package for phylogenetic analysis using multi-copy gene trees

David Fernández-Baca, John Gordon Burleigh, Ruchi Chaudhary, 2015, Bioinform..

Fast Local Search for Unrooted Robinson-Foulds Supertrees

David Fernández-Baca, John Gordon Burleigh, Ruchi Chaudhary, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Scaling the Gene Duplication Problem Towards the Tree of Life

John Gordon Burleigh, André Wehe, 2010, BICoB.

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

Oliver Eulenstein, John Gordon Burleigh, Ruchi Chaudhary, 2012, BMC Bioinformatics.

The Deep Coalescence Consensus Tree Problem is Pareto on Clusters

Oliver Eulenstein, John Gordon Burleigh, Harris T. Lin, 2011, ISBRA.

Triplet supertree heuristics for the tree of life

Oliver Eulenstein, John Gordon Burleigh, Harris T. Lin, 2009, BMC Bioinformatics.

Fast Local Search for Unrooted Robinson-Foulds Supertrees

David Fernández-Baca, John Gordon Burleigh, Ruchi Chaudhary, 2011, ISBRA.

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems

Oliver Eulenstein, John Gordon Burleigh, André Wehe, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search

Oliver Eulenstein, Mukul S. Bansal, John Gordon Burleigh, 2007, RECOMB.

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

Oliver Eulenstein, Mukul S. Bansal, John Gordon Burleigh, 2008, Bioinform..

GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches

Oliver Eulenstein, Pawel Górecki, John Gordon Burleigh, 2012, ISBRA.