Jesse D. Ziebarth

发表

CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2012, Nucleic Acids Res..

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2011, Nucleic Acids Res..

Bayesian Network Webserver: a comprehensive tool for biological network modeling

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2013, Bioinform..

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2013, Nucleic Acids Res..

SomamiR: a database for somatic mutations impacting microRNA function in cancer

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2012, Nucleic Acids Res..

Linking genotype to phenotype with Bayesian network modeling of Chlamydia infection

Bao Li, Yan Cui, Jesse D. Ziebarth, 2010, BMC Bioinformatics.

Coarse-grained Simulations of the Impact of Chain Length and Stiffness on the Formation and Aggregation of Polyelectrolyte Complexes.

Jesse D. Ziebarth, C. E. Gallops, Yongmei Wang, 2020, Macromolecular theory and simulations.

Effect of the Protonation Level and Ionic Strength on the Structure of Linear Polyethyleneimine

Jesse D. Ziebarth, C. E. Gallops, Chang Yu, 2019, ACS Omega.

Multiscale molecular modeling and rational design of polymer based gene delivery vectors.

Jesse D. Ziebarth, Yongmei Wang, 2011, Journal of controlled release : official journal of the Controlled Release Society.

Integrative Analysis of Somatic Mutations Altering MicroRNA Targeting in Cancer Genomes

Jesse D. Ziebarth, Y. Cui, A. Bhattacharya, 2012, PloS one.

Functional Analysis of Genetic Variants and Somatic Mutations Impacting MicroRNA-Target Recognition: Bioinformatics Resources.

Jesse D. Ziebarth, Y. Cui, A. Bhattacharya, 2019, Methods in molecular biology.

Systematic Analysis of microRNA Targeting Impacted by Small Insertions and Deletions in Human Genome

Yan Cui, Jesse D. Ziebarth, Y. Cui, 2012, PloS one.

Photosensitizer-loaded gold nanorods for near infrared photodynamic and photothermal cancer therapy.

Jesse D. Ziebarth, Xiaohua Huang, S. Bhana, 2016, Journal of colloid and interface science.

A Monte Carlo study on LCCC characterization of graft copolymers at the critical condition of side chains

Jesse D. Ziebarth, Yutian Zhu, Y. Wang, 2015 .

Treatment- and Population-Dependent Activity Patterns of Behavioral and Expression QTLs

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2012, PloS one.

Structural Comparisons of PEI/DNA and PEI/siRNA Complexes Revealed with Molecular Dynamics Simulations.

Jesse D. Ziebarth, Yongmei Wang, Dennis R Kennetz, 2017, The journal of physical chemistry. B.

Coarse-grained molecular dynamics simulations of DNA condensation by block copolymer and formation of core-corona structures.

Jesse D. Ziebarth, Yongmei Wang, 2010, The journal of physical chemistry. B.

Understanding the protonation behavior of linear polyethylenimine in solutions through Monte Carlo simulations.

Jesse D. Ziebarth, Yongmei Wang, 2010, Biomacromolecules.

Exploring Structures and Dynamics of Protamine Molecules through Molecular Dynamics Simulations

Jesse D. Ziebarth, Yongmei Wang, J. DeRouchey, 2022, ACS omega.

Interactions of complex polymers with nanoporous substrate.

Jesse D. Ziebarth, Yongmei Wang, 2016, Soft matter.

Comparison of Critical Adsorption Points of Ring Polymers with Linear Polymers

Jesse D. Ziebarth, Yongmei Wang, J. Ahn, 2016 .

Multiscalar genetic pathway modeling with hybrid Bayesian networks

Jesse D. Ziebarth, Y. Cui, Yan Cui, 2019, WIREs Computational Statistics.

Precise Network Modeling of Systems Genetics Data Using the Bayesian Network Webserver.

Jesse D. Ziebarth, Yan Cui, Jesse D Ziebarth, 2017, Methods in molecular biology.

Molecular dynamics simulations of DNA-polycation complex formation.

Jesse D. Ziebarth, Yongmei Wang, 2009, Biophysical journal.

Gene-by-environment modulation of lifespan and weight gain in the murine BXD family

Jesse D. Ziebarth, Arthur G. Centeno, Megan K. Mulligan, 2021, Nature Metabolism.

Dependence of critical condition in liquid chromatography on the pore size of column substrates

Jesse D. Ziebarth, Yongmei Wang, Yutian Zhu, 2011 .

Partitioning of star branched polymers into pores at three chromatography conditions.

Jesse D. Ziebarth, Yongmei Wang, Yutian Zhu, 2010, Journal of chromatography. A.

Dependence of the Critical Adsorption Point on Surface and Sequence Disorders for Self-Avoiding Walks Interacting with a Planar Surface

Jesse D. Ziebarth, Yongmei Wang, A. Polotsky, 2007, 0704.0762.

The adsorption and partitioning of self-avoiding walk polymer chains into pores from a bulk theta solution

Jesse D. Ziebarth, Yongmei Wang, S. Orelli, 2005 .

Systems genetics analysis of molecular pathways underlying ethanol-induced behavioral phenotypes

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2010, 2010 Biomedical Sciences and Engineering Conference.

Host Genetics and Chlamydia Disease: Prediction and Validation of Disease Severity Mechanisms

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2012, PloS one.

Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson‐Boltzmann approach

Jesse D. Ziebarth, Yongmei Wang, Timothy J. Robbins, 2014, Biopolymers.

Retention Behavior of Star-Shaped Polystyrene near the Chromatographic Critical Condition

Jesse D. Ziebarth, Y. Wang, Kwanyoung Lee, 2008 .

Interplay of Coil–Globule Transition and Surface Adsorption of a Lattice HP Protein Model

Jesse D. Ziebarth, Yongmei Wang, Meng‐Bo Luo, 2014, The journal of physical chemistry. B.

A Polymer Physics Perspective on Why PEI Is an Effective Nonviral Gene Delivery Vector

Jesse D. Ziebarth, Yongmei Wang, C. Gallops, 2020 .

Segregation of a Spontaneous Klrd1 (CD94) Mutation in DBA/2 Mouse Substrains

Jesse D. Ziebarth, Robert W. Williams, K. Schughart, 2014, G3: Genes, Genomes, Genetics.

Gene Network Based Analysis Identifies a Co-expression Module Involved in Regulating Plasma Lipids with High-Fat Diet Response.

Jesse D. Ziebarth, Ludger J. E. Goeminne, Evan G. Williams, 2023, The Journal of nutritional biochemistry.

Predictive Models and Impact of Interfacial Contacts and Amino Acids on Protein–Protein Binding Affinity

Jesse D. Ziebarth, Yongmei Wang, Mitchell Lee Taylor, 2023, bioRxiv.