Joshua A. Klein

发表

Protocol for analysis of glycoproteomics LC-MS data using GlycReSoft

Joseph Zaia, Joshua A. Klein, 2020 .

glypy - A Glycoinformatics Toolkit for Python

Nathan Edwards, Joseph Zaia, Joshua A. Klein, 2015 .

A review of methods for interpretation of glycopeptide tandem mass spectral data

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2015, Glycoconjugate Journal.

Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra *

Joshua A. Klein, J. Zaia, Luis Carvalho, 2018, Molecular & Cellular Proteomics.

Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation

Joseph Zaia, Joshua A. Klein, J. Zaia, 2016, Analytical and Bioanalytical Chemistry.

Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides

Joshua A. Klein, J. Zaia, G. Boons, 2018, Journal of The American Society for Mass Spectrometry.

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway*

Joshua A. Klein, J. Zaia, Kshitij Khatri, 2018, Molecular & Cellular Proteomics.

Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides *

Joshua A Klein, Joseph Zaia, Joshua A. Klein, 2018, Molecular & Cellular Proteomics.

Assignment of coronavirus spike protein site-specific glycosylation using GlycReSoft

Joshua A. Klein, J. Zaia, 2020, bioRxiv.

Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules*

Joshua A. Klein, J. Zaia, Rekha Raghunathan, 2019, Molecular & Cellular Proteomics.

A perspective on confident comparison of glycoprotein site-specific glycosylation in sample cohorts.

Joshua A. Klein, J. Zaia, 2019, Biochemistry.

Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate

Joshua A. Klein, J. Samuelson, C. Costello, 2017, PloS one.

A review of methods for interpretation of glycopeptide tandem mass spectral data

Joshua A. Klein, N. Leymarie, J. Zaia, 2016, Glycoconjugate Journal.

Improving Statistical Certainty of Glycosylation Similarity between Influenza A Virus Variants Using Data-Independent Acquisition Mass Spectrometry

Joshua A. Klein, J. Zaia, Deborah Chang, 2022, Molecular & cellular proteomics : MCP.

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Silvio C. E. Tosatto, Andrew R. Jones, Tytus D. Mak, 2023, Journal of proteome research.

Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides.

Catherine E Costello, Joshua A Klein, Joseph Zaia, 2017, Analytical chemistry.

Comparative Lipid Profiling of the Cnidarian Aiptasia pallida and Its Dinoflagellate Symbiont

Joshua A. Klein, T. Garrett, J. Schwarz, 2013, PloS one.

Expanding N-Glycopeptide Identifications by Fragmentation Prediction and Glycome Network Smoothing

Joshua A. Klein, Luis Carvalho, J. Zaia, 2021, bioRxiv.

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides

Cheng Lin, Catherine E Costello, Joshua A Klein, 2018, Journal of The American Society for Mass Spectrometry.

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions

Robert J Woods, Joshua A Klein, Joseph Zaia, 2016, Molecular & Cellular Proteomics.

Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework.

Lev I Levitsky, Joshua A Klein, Mark V Ivanov, 2018, Journal of proteome research.

Universal Spectrum Identifier for mass spectra

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020, Nature Methods.

Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms

Anthony J. Cesnik, Joshua A. Klein, N. Kelleher, 2021, Journal of proteome research.

pymzML v2.0: introducing a highly compressed and seekable gzip format

Michael Hippler, Christian Fufezan, Stefan Schulze, 2018, Bioinform..

glypy - An open source glycoinformatics library.

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2019, Journal of proteome research.

GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model

Joshua A. Klein, J. Zaia, Luis Carvalho, 2021, Molecular & cellular proteomics : MCP.

Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein

Joshua A. Klein, J. Zaia, Deborah Chang, 2021, Analytical and Bioanalytical Chemistry.

De novo glycan sequencing by electronic excitation dissociation MS2-guided MS3 analysis on an Omnitrap-Orbitrap hybrid instrument

Joshua A. Klein, J. Zaia, D. Papanastasiou, 2023, Chemical science.

Relative Retention Time Estimation Improves N-Glycopeptide Identifications By LC-MS/MS.

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2020, Journal of proteome research.

Application of network smoothing to glycan LC‐MS profiling

Luis Carvalho, Joseph Zaia, Joshua Klein, 2018, Bioinform..

Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry.

Joseph Zaia, Joshua Klein, Rosa Viner, 2016, Analytical chemistry.

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway*

Joshua A. Klein, J. Zaia, Kshitij Khatri, 2018, Molecular & Cellular Proteomics.