Irene Otero-Muras

发表

SELANSI: a toolbox for simulation of stochastic gene regulatory networks

Antonio A. Alonso, Manuel Pájaro, Irene Otero-Muras, 2017, Bioinform..

Engineering complexity in biochemical networks: methods and tools for the automated design of biochemical bistable switches and limit cycle oscillators

Irene Otero-Muras, 2019 .

Optimization Based Design of Synthetic Oscillators from Standard Biological Parts

Julio R. Banga, Irene Otero-Muras, J. Banga, 2014, CMSB.

CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks

Vladislav A Petyuk, Irene Otero-Muras, Brandon C Reyes, 2020, Bioinform..

Exploring Design Principles of Gene Regulatory Networks via Pareto Optimality

Julio R. Banga, Irene Otero-Muras, J. Banga, 2016 .

Distilling Robust Design Principles of Biocircuits Using Mixed Integer Dynamic Optimization

Julio R. Banga, Irene Otero-Muras, 2019 .

Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling

Jörg Stelling, Irene Otero-Muras, Pencho Yordanov, 2017, PLoS Comput. Biol..

Efficient simulation of stochastic gene regulatory networks

Antonio A. Alonso, Manuel Pájaro, Irene Otero-Muras, 2018 .

Automated design of bio-switches for synthetic biology: the role of molecular noise

Julio R. Banga, Irene Otero-Muras, Carlos Vázquez, 2019 .

BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks

Joerg Stelling, Irene Otero-Muras, Pencho Yordanov, 2019, Bioinform..

Routes to Multiple Equilibria for Mass-Action Kinetic Systems

Antonio A. Alonso, Manuel Pájaro, Irene Otero-Muras, 2018, Complex..

Process control based on physical insight: passivity and Hamiltonian system models

Gábor Szederkényi, Katalin M. Hangos, Irene Otero-Muras, 2006 .

Inferring design principles in systems and synthetic biology through optimization-based methods

Irene Otero-Muras, 2019 .

A systematic approach to plant-wide control based on thermodynamics

Julio R. Banga, Antonio A. Alonso, Irene Otero-Muras, 2007, Comput. Chem. Eng..

A general technique for the detection of switch-like bistability in chemical reaction networks governed by mass action kinetics with conservation laws

Vladislav A Petyuk, Irene Otero-Muras, Brandon C Reyes, 2020, bioRxiv.

Automated engineering of synthetic metabolic pathways for efficient association to reaction rules.biomanufacturing.

Pablo Carbonell, Irene Otero-Muras, Pablo Carbonell, 2020, Metabolic engineering.

Development of an User-Friendly Virtual Environment for Design and Simulation of Food Processing Plants: Design and Simulation of Food Processing Plants: Application to the Valorization Process of Fish Skins to Obtain Gelatines

Antonio A. Alonso, Irene Otero-Muras, Luis T. Antelo, 2008 .

Automated Design Framework for Synthetic Biology Exploiting Pareto Optimality.

Irene Otero-Muras, Julio R Banga, J. Banga, 2017, ACS synthetic biology.

Synthetic Gene Circuit Analysis and Optimization.

Irene Otero-Muras, Julio R Banga, 2021, Methods in molecular biology.

Multicriteria global optimization for biocircuit design

Julio R. Banga, Irene Otero-Muras, J. Banga, 2014, BMC Systems Biology.

Optimization-based prediction of fold bifurcations in nonlinear ODE models

Julio R. Banga, Irene Otero-Muras, J. Banga, 2018 .

Local dissipative Hamiltonian description of reversible reaction networks

Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso, 2008, Syst. Control. Lett..

A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves

Jörg Stelling, Irene Otero-Muras, Pencho Yordanov, 2014, BMC Systems Biology.

Multiobjective optimization of gene circuits for metabolic engineering

Julio R. Banga, Irene Otero-Muras, Diego A. Oyarzún, 2019, IFAC-PapersOnLine.

A systematic approach to plant-wide control based on thermodynamics

Julio R. Banga, Antonio A. Alonso, Irene Otero-Muras, 2005 .

Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications

Eva Balsa-Canto, Antonio A. Alonso, Irene Otero-Muras, 2010, Environ. Model. Softw..

A thermodynamic based plant-wide control design procedure of the tennessee eastman process

Julio R. Banga, Antonio A. Alonso, Irene Otero-Muras, 2006 .

Mixed integer multiobjective optimization approaches for systems and synthetic biology

Julio R. Banga, Irene Otero-Muras, J. Banga, 2018 .

Design Principles of Biological Oscillators through Optimization: Forward and Reverse Analysis

Julio R. Banga, Irene Otero-Muras, J. Banga, 2016, PloS one.

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits

Julio R. Banga, Irene Otero-Muras, David Henriques, 2016, Bioinform..

Dynamic analysis and control of biochemical reaction networks

Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso, 2008, Math. Comput. Simul..

A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws

Irene Otero-Muras, Brandon C Reyes, Vladislav A. Petyuk, 2022, BMC Bioinformatics.

Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting.

Manuel Pájaro, Irene Otero-Muras, Antonio A Alonso, 2017, Journal of theoretical biology.

Improved optimization methods for the multiobjective design of bioprocesses

Julio R. Banga, Irene Otero-Muras, José-Oscar H. Sendín, 2006 .

Contributing to fisheries sustainability by making the best possible use of their resources: the BEFAIR initiative.

Irene Otero-Muras, Luis T. Antelo, Raúl Pérez-Gálvez, 2010 .

Characterizing Multistationarity Regimes in Biochemical Reaction Networks

Julio R. Banga, Antonio A. Alonso, Irene Otero-Muras, 2012, PloS one.

DYNAMIC ANALYSIS AND CONTROL OF CHEMICAL AND BIOCHEMICAL REACTION NETWORKS

Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso, 2006 .