Olivier Gimenez

发表

Complex decisions made simple: a primer on stochastic dynamic programming

Lucile Marescot, Guillaume Chapron, Iadine Chadès, 2013 .

Classical Inference Based on Likelihood

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

data file #2

Byron J. T. Morgan, Wilfried Thuiller, Sandrine Pavoine, 2014 .

Detecting and estimating density dependence in wildlife populations

Olivier Gimenez, Jean-Dominique Lebreton, O. Gimenez, 2013 .

Inferring animal social networks with imperfect detection

Olivier Gimenez, Lorena Mansilla, M. Javier Klaich, 2019, Ecological Modelling.

Multi-Site Integrated Population Modelling

Byron J. T. Morgan, Rachel S. McCrea, Panagiotis Besbeas, 2010 .

A Proposal for a Goodness‐of‐Fit Test to the Arnason‐Schwarz Multisite Capture‐Recapture Model

Roger Pradel, Olivier Gimenez, Claire M A Wintrebert, 2003, Biometrics.

R2ucare: An R package to perform goodness-of-fit tests for capture-recapture models

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2018 .

Model Formulation and Evaluation

Byron J. T. Morgan, David L. Borchers, Panagiotis Besbeas, 2014 .

Integrating multiple data sources to fit matrix population models for interacting species

Olivier Gimenez, Frédéric Barraquand, F. Barraquand, 2019, bioRxiv.

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

John C. Nash, Eun Jung Kim, Casper W. Berg, 2013 .

A hierarchical distance sampling approach to estimating mortality rates from opportunistic carcass surveillance data

Olivier Gimenez, Rémi Choquet, Steve E Bellan, 2013, Methods in ecology and evolution.

A new method for estimating animal abundance with two sources of data in capture–recapture studies

Olivier Gimenez, Bénédicte Madon, Brian H. McArdle, 2011 .

Combining multiple data sources in species distribution models while accounting for spatial dependence and overfitting with combined penalised likelihood maximisation

Olivier Gimenez, Ian Renner, Julie Louvrier, 2019, bioRxiv.

Final Report of the ModSysC2020 Working Group - Data, Models and Theories for Complex Systems: new challenges and opportunities

Patrick Valduriez, Pascal Neveu, Olivier Gascuel, 2012 .

data file #1

Byron J. T. Morgan, Wilfried Thuiller, Sandrine Pavoine, 2014 .

R2ucare: An R package to perform goodness-of-fit tests for capture-recapture models

Olivier Gimenez, Rémi Choquet, Roger Pradel, 2017, bioRxiv.

Static Context Header Compression (SCHC) over LoRaWAN

Olivier Gimenez, Ivaylo Petrov, 2019 .

Matrix Models as Building Blocks for Population Dynamics

Byron J. T. Morgan, David L. Borchers, Panagiotis Besbeas, 2014 .

Programming in WinBUGS

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

A dynamic and hierarchical spatial occupancy model for interacting species

Olivier Gimenez, Eivind Flittie Kleiven, Frederic Barraquand, 2020 .

Estimating demographic parameters using hidden process dynamic models.

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2012, Theoretical population biology.

Designing cost-effective capture-recapture surveys for improving the monitoring of survival in bird populations

Olivier Gimenez, Aurélien Besnard, Sébastien Devillard, 2017 .

Integrating multiple data sources to fit matrix population models for interacting species

Olivier Gimenez, Frédéric Barraquand, F. Barraquand, 2019, bioRxiv.

Dealing with many correlated covariates in capture-recapture models

Olivier Gimenez, Christophe Barbraud, 2016 .

Known unknowns in an imperfect world: incorporating uncertainty in recruitment estimates using multi-event capture–recapture models

Olivier Gimenez, Marine Desprez, Clive R McMahon, 2013, Ecology and evolution.

Methods for investigating parameter redundancy

Byron J. T. Morgan, Olivier Gimenez, Rémi Choquet, 2004 .

Multi-State Models

Byron J. T. Morgan, Olivier Gimenez, Ruth King, 2009 .

An Integrated Analysis of Multisite Recruitment, Mark-Recapture-Recovery and Multisite Census Data

Byron J. T. Morgan, Olivier Gimenez, Jean-Dominique Lebreton, 2009 .

Improving abundance estimation by combining capture–recapture and occupancy data: example with a large carnivore

Eric Marboutin, Olivier Gimenez, Sylvain Gatti, 2014 .

An assessment of integrated population models: bias, accuracy, and violation of the assumption of independence.

Olivier Gimenez, Raphaël Arlettaz, Michael Schaub, 2010, Ecology.

Bayesian non-parametric detection heterogeneity in ecological models

Olivier Gimenez, Daniel Turek, Claudia Wehrhahn, 2020, Environmental and Ecological Statistics.

Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations

Olivier Gimenez, Gilbert Marzolin, O. Gimenez, 2018, J. Open Source Softw..

Estimating abundance with interruptions in data collection using open population spatial capture–recapture models

Pierre Dupont, Olivier Gimenez, Cyril Milleret, 2020, Ecosphere.

A new strategy for diagnostic model assessment in capture–recapture

Byron J. T. Morgan, Rachel S. McCrea, Olivier Gimenez, 2017 .

Fitting occupancy models with E‐SURGE: hidden Markov modelling of presence–absence data

Roger Pradel, Eric Marboutin, Olivier Gimenez, 2014 .

Markov Chain Monte Carlo

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

Multi-State Models

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

Uncovering ecological state dynamics with hidden Markov models

Roland Langrock, David L. Borchers, Brett T. McClintock, 2020, Ecology letters.

Data, Models and Likelihoods

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

Next generation serology: integrating cross-sectional and capture-recapture approaches to infer disease dynamics.

Olivier Gimenez, Thierry Chambert, Thierry Boulinier, 2020, Ecology.

Accounting for misidentification and heterogeneity in occupancy studies using hidden Markov models

Eric Marboutin, Olivier Gimenez, Julie Louvrier, 2018, Ecological Modelling.

Use of ambiguous detections to improve estimates from species distribution models

Eric Marboutin, Olivier Gimenez, David Miller, 2018, Conservation biology : the journal of the Society for Conservation Biology.

REVIEW: Identifying links between vital rates and environment: a toolbox for the applied ecologist

Olivier Gimenez, Rémi Choquet, Morten Frederiksen, 2014 .

Exploring the impact of lesser-known social dynamics on wolf populations through an individual-based approach

Christophe Duchamp, Olivier Gimenez, Sarah Bauduin, 2020, bioRxiv.

State-space modelling of data on marked individuals

Olivier Gimenez, Rémi Choquet, Hubert Varella, 2007 .

State-Space Modelling

Byron J. T. Morgan, Olivier Gimenez, SP Brooks, 2009 .

Fitting stochastic predator-prey models using both population density and kill rate data.

Olivier Gimenez, Frédéric Barraquand, F. Barraquand, 2019, Theoretical population biology.

Identifying uncertainties in scenarios and models of socio-ecological systems in support of decision-making

Brendan A. Wintle, Raphaël Pélissier, Ian P. Holman, 2021, One Earth.

Trade-off between deep learning for species identification and inference about predator-prey co-occurrence: Reproducible R workflow integrating models in computer vision and ecological statistics

Lucile Marescot, Christophe Duchamp, Olivier Gimenez, 2021, 2108.11509.

Bias in estimation of adult survival and asymptotic population growth rate caused by undetected capture heterogeneity

Lucile Marescot, Olivier Gimenez, Jean-Dominique Lebreton, 2012 .

Estimating and Visualizing Fitness Surfaces Using Mark-Recapture Data

Thomas Lenormand, Olivier Gimenez, Arnaud Grégoire, 2009, Evolution; international journal of organic evolution.

The magnitude and selectivity of natural and multiple anthropogenic mortality causes in hunted brown bears.

Olivier Gimenez, Atle Mysterud, Jon E Swenson, 2009, The Journal of animal ecology.

The Risk of Flawed Inference in Evolutionary Studies When Detectability Is Less than One

Roger Pradel, Rita Covas, Olivier Gimenez, 2008, The American Naturalist.

Dynamic spatial interactions between the native invader Brown‐headed Cowbird and its hosts

Olivier Gimenez, Julien Papaïx, Jens-Christian Svenning, 2015 .

ESTIMATING SURVIVAL AND TEMPORARY EMIGRATION IN THE MULTISTATE CAPTURE–RECAPTURE FRAMEWORK

Roger Pradel, Olivier Gimenez, Michael Schaub, 2004 .

Influence of harvesting pressure on demographic tactics: implications for wildlife management.

Olivier Gimenez, Stefano Focardi, Jean-Michel Gaillard, 2011 .

Frailty in state-space models: application to actuarial senescence in the Dipper.

Olivier Gimenez, Anne Charmantier, Gilbert Marzolin, 2011, Ecology.

Demographic variation and population viability in a threatened Himalayan medicinal and aromatic herb Nardostachys grandiflora: matrix modelling of harvesting effects in two contrasting habitats

Roger Pradel, Olivier Gimenez, O. Gimenez, 2007 .

Estimating individual fitness in the wild using capture–recapture data

Olivier Gimenez, Jean-Michel Gaillard, J. Gaillard, 2018, Population Ecology.

Massive immigration balances high anthropogenic mortality in a stable eagle owl population: Lessons for conservation

Olivier Gimenez, Raphaël Arlettaz, Michael Schaub, 2010 .

INVESTIGATING EVOLUTIONARY TRADE‐OFFS IN WILD POPULATIONS OF ATLANTIC SALMON (SALMO SALAR): INCORPORATING DETECTION PROBABILITIES AND INDIVIDUAL HETEROGENEITY

Olivier Gimenez, Etienne Prévost, O. Gimenez, 2010, Evolution; international journal of organic evolution.

Estimating demographic parameters from capture–recapture data with dependence among individuals within clusters

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2013 .

Integrated Population Modelling

Byron J. T. Morgan, David L. Borchers, Panagiotis Besbeas, 2014 .

Capture–recapture population growth rate as a robust tool against detection heterogeneity for population management

Roger Pradel, Lucile Marescot, Christophe Duchamp, 2011 .

Use of hidden Markov capture–recapture models to estimate abundance in the presence of uncertainty: Application to the estimation of prevalence of hybrids in animal populations

Olivier Gimenez, Paolo Ciucci, Nina Luisa Santostasi, 2019, Ecology and evolution.

Modelling Population Dynamics

Byron J. T. Morgan, David L. Borchers, Panagiotis Besbeas, 2014 .

Parameter Redundancy in Multistate Capture‐Recapture Models

Olivier Gimenez, Rémi Choquet, Jean-Dominique Lebreton, 2003 .

Principles and interest of GOF tests for multistate capture-recapture models

Roger Pradel, Olivier Gimenez, Jean-Dominique Lebreton, 2005, Animal Biodiversity and Conservation.

Patterns of denitrification rates in European alluvial soils under various hydrological regimes

Olivier Gimenez, Bruna Gumiero, Christer Nilsson, 2007 .

Individual heterogeneity and capture–recapture models: what, why and how?

Olivier Gimenez, Jean-Michel Gaillard, Emmanuelle Cam, 2018 .

Failure to coordinate management in transboundary populations hinders the achievement of national management goals: The case of wolverines in Scandinavia

Olivier Gimenez, Henrik Brøseth, John D. C. Linnell, 2019, Journal of Applied Ecology.

Inferring wildlife poaching in Southeast Asia with multispecies dynamic occupancy models

Lucile Marescot, Olivier Gimenez, O. Gimenez, 2019, bioRxiv.

Comparing survival among species with imperfect detection using multilevel analysis of mark–recapture data: a case study on bats

Roger Pradel, Olivier Gimenez, Michael Schaub, 2012 .

NONPARAMETRIC ESTIMATION OF NATURAL SELECTION ON A QUANTITATIVE TRAIT USING MARK‐RECAPTURE DATA

Thomas Lenormand, Rita Covas, Olivier Gimenez, 2006, Evolution; international journal of organic evolution.

Taxonomic and regional uncertainty in species-area relationships and the identification of richness hotspots

Kevin J. Gaston, David Mouillot, Olivier Gimenez, 2008, Proceedings of the National Academy of Sciences.

Now you see him, now you don't: experience, not age, is related to reproduction in kittiwakes

Roger Pradel, Olivier Gimenez, Marine Desprez, 2011, Proceedings of the Royal Society B: Biological Sciences.

Weak Identifiability in Models for Mark-Recapture-Recovery Data

Byron J. T. Morgan, Stephen P. Brooks, Olivier Gimenez, 2009 .

Quantifying the impact of longline fisheries on adult survival in the black‐footed albatross

Olivier Gimenez, William L. Kendall, Jean-Dominique Lebreton, 2007 .

Social status mediates the fitness costs of infection with canine distemper virus in Serengeti spotted hyenas

Lucile Marescot, Olivier Gimenez, Jean-Dominique Lebreton, 2018, Functional ecology.

Wildlife in a Politically Divided World: Insularism Inflates Estimates of Brown Bear Abundance

Olivier Gimenez, Henrik Brøseth, Richard Bischof, 2016 .

Estimating the strength of density dependence in the presence of observation errors using integrated population models

Olivier Gimenez, Raphaël Arlettaz, Michael Schaub, 2012 .

Disentangling the effects of climate, density dependence, and harvest on an iconic large herbivore's population dynamics.

Olivier Gimenez, Fernando Colchero, Kent R. Hersey, 2015, Ecological applications : a publication of the Ecological Society of America.

Population regulation of territorial species: both site dependence and interference mechanisms matter

Olivier Gimenez, Debora Arlt, Carl Jones, 2011, Proceedings of the Royal Society B: Biological Sciences.

Efficient profile-likelihood confidence intervals for capture-recapture models

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2005 .

Environmental influence on canopy phenology in the dry tropics

Olivier Gimenez, Venceslas Goudiaby, O. Gimenez, 2005 .

M-SURGE: new software specifically designed for multistate capture-recapture models

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2004 .

Litter quality and decomposability of species from a Mediterranean succession depend on leaf traits but not on nitrogen supply.

Olivier Gimenez, Eric Garnier, Cyrille Violle, 2009, Annals of botany.

Metapopulation Dynamics of Species with Cryptic Life Stages

Olivier Gimenez, Philippe Jarne, Patrice David, 2013, The American Naturalist.

Abundance of rare and elusive species: Empirical investigation of closed versus spatially explicit capture–recapture models with lynx as a case study†

Eric Marboutin, Olivier Gimenez, Sylvain Gatti, 2013 .

Estimation of sensitivity and specificity of five serological tests for the diagnosis of porcine brucellosis.

Olivier Gimenez, Barbara Dufour, Laurence Meyer, 2012, Preventive veterinary medicine.

Discussion: Towards a bayesian analysis template?

Olivier Gimenez, O. Gimenez, 2008 .

Individual heterogeneity and capture-recapture models: what, why and how?

Olivier Gimenez, Jean-Michel Gaillard, Emmanuelle Cam, 2017, bioRxiv.

NONPARAMETRIC ESTIMATION OF NATURAL SELECTION ON A QUANTITATIVE TRAIT USING MARK-RECAPTURE DATA

Thomas Lenormand, Rita Covas, Olivier Gimenez, 2006 .

Capture–recapture models with heterogeneity to study survival senescence in the wild

Roger Pradel, Olivier Gimenez, Guillaume Péron, 2010 .

HIGH HUNTING PRESSURE SELECTS FOR EARLIER BIRTH DATE: WILD BOAR AS A CASE STUDY

Olivier Gimenez, Jean-Michel Gaillard, Aurélien Besnard, 2011, Evolution; international journal of organic evolution.

Estimation of immigration rate using integrated population models

Olivier Gimenez, Raphaël Arlettaz, Michael Schaub, 2010 .

Comparing parent–offspring regression with frequentist and Bayesian animal models to estimate heritability in wild populations: a simulation study for Gaussian and binary traits

Olivier Gimenez, Pierre de Villemereuil, Blandine Doligez, 2013 .

Nonparametric spatial regression of survival probability: visualization of population sinks in Eurasian woodcock.

Olivier Gimenez, Guillaume Péron, O. Gimenez, 2011, Ecology.

Estimation of sex‐specific survival with uncertainty in sex assessment

Roger Pradel, Olivier Gimenez, Rémi Choquet, 2008 .

Robustness of Eco-Epidemiological Capture-Recapture Parameter Estimates to Variation in Infection State Uncertainty

Lucile Marescot, Olivier Gimenez, Jean-Dominique Lebreton, 2018, Front. Vet. Sci..

Importance of Accounting for Detection Heterogeneity When Estimating Abundance: the Case of French Wolves

Roger Pradel, Christophe Duchamp, Eric Marboutin, 2010, Conservation biology : the journal of the Society for Conservation Biology.

Statistical ecology comes of age

Roger Pradel, Wilfried Thuiller, Perry de Valpine, 2014, Biology Letters.

U‐CARE: Utilities for performing goodness of fit tests and manipulating CApture–REcapture data

Roger Pradel, Olivier Gimenez, Jean-Dominique Lebreton, 2009 .

Mapping and explaining wolf recolonization in France using dynamic occupancy models and opportunistic data

Christophe Duchamp, Eric Marboutin, Olivier Gimenez, 2017, bioRxiv.

Estimating dispersal among numerous sites using capture-recapture data.

Roger Pradel, Olivier Gimenez, Marc Bélisle, 2014, Ecology.

Assessing individual heterogeneity using model selection criteria: how many mixture components in capture–recapture models?

Eric Marboutin, Olivier Gimenez, Sarah Cubaynes, 2012 .

Modelling population dynamics : model formulation, fitting and assessment using state-space methods

Byron J. T. Morgan, David L. Borchers, Panagiotis Besbeas, 2014 .