Alexandro E. Trevino

发表

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

Anshul Kundaje, Nicholas A. Sinnott-Armstrong, Howard Y. Chang, 2017 .

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

Alexandro E. Trevino, S. Konermann, M. Brigham, 2014, Nature.

Optical Control of Mammalian Endogenous Transcription and Epigenetic States

Randall J. Platt, David A. Scott, Alexandro E. Trevino, 2013, Nature.

Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells

David A. Scott, Andrea J. Kriz, Alexandro E. Trevino, 2014, Nature Biotechnology.

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

David A. Scott, Alexandro E. Trevino, S. Konermann, 2013, Cell.

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

Nicholas A. Sinnott-Armstrong, Howard Y. Chang, Viviana I. Risca, 2017, Nature Methods.

Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements

Michael Wainberg, Anshul Kundaje, Oana Ursu, 2019, bioRxiv.

SPACE-GM: geometric deep learning of disease-associated microenvironments from multiplex spatial protein profiles

Alexandro E. Trevino, James Y. Zou, Kyle Swanson, 2022, bioRxiv.

7-UP: Generating in silico CODEX from a small set of immunofluorescence markers

Alexandro E. Trevino, James Y. Zou, Kyle Swanson, 2022, bioRxiv.

Omni-ATAC-seq: Improved ATAC-seq protocol

Nicholas A. Sinnott-Armstrong, Howard Y. Chang, Viviana I. Risca, 2017 .

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

David A. Scott, Alexandro E. Trevino, Feng Zhang, 2013, Cell.

Single-Cell Transcriptomic Census of Endothelial Changes Induced by Matrix Stiffness and the Association with Atherosclerosis

Frank W Charbonier, Alexandro E. Trevino, P. Cahan, 2022, Advanced functional materials.

Nociceptor neurons affect cancer immunosurveillance

Simmie L. Foster, Alexandro E. Trevino, R. Drapkin, 2022, Nature.

Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens

Alexandro E. Trevino, Kyle Swanson, A. Egloff, 2022, Nature Biomedical Engineering.

Diverse lncRNA mechanisms in brain development and disease.

Howard Y. Chang, Alexandro E. Trevino, C. Ang, 2020, Current opinion in genetics & development.

Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution

Howard Y. Chang, Alexandro E. Trevino, A. Kundaje, 2020, Cell.

Chromatin accessibility dynamics in a model of human forebrain development

Howard Y. Chang, Alexandro E. Trevino, J. Pritchard, 2020, Science.

Genome editing using Cas9 nickases.

Alexandro E. Trevino, Feng Zhang, 2014, Methods in enzymology.

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

David A. Scott, Alexandro E. Trevino, S. Konermann, 2013, Cell.

Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements

Michael P Snyder, Michael Wainberg, Anshul Kundaje, 2019, Nature Communications.

Direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping (CasKAS)

Alexandro E. Trevino, A. Kundaje, Chuan He, 2021, bioRxiv.

Spatial proteomics of human diabetic kidney disease, from health to class III

Monee Y. McGrady, Alexandro E. Trevino, Zhenqin Wu, 2023, bioRxiv.

Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

Alexandro E. Trevino, A. Kundaje, G. Marinov, 2021, Nature Genetics.

Resource Double Nicking by RNA-Guided CRISPR Cas 9 for Enhanced Genome Editing Specificity

David A. Scott, Alexandro E. Trevino, S. Konermann, 2013 .

emObject: domain specific data abstraction for spatial omics

Nancy R. Zhang, Alexandro E. Trevino, Amy Lam, 2023, bioRxiv.

CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping

Alexandro E. Trevino, A. Kundaje, Chuan He, 2023, Genome Biology.

Characterizing Tissue Structures from Spatial Omics with Spatial Cellular Graph Partition

Monee Y. McGrady, Alexandro E. Trevino, Zhenqin Wu, 2023, bioRxiv.

Supplementary Material: Spatial feature extraction for enhancing cancer survival analysis in spatial proteomics imaging data

Alexandro E. Trevino, Z. Bar-Joseph, U. Duvvuri, 2023 .

Optical Control of Mammalian Endogenous Transcription and Epigenetic States

Randall J. Platt, Alexandro E. Trevino, G. Church, 2013, Nature.

Transcription-dependent domain-scale 3D genome organization in dinoflagellates

Alexandro E. Trevino, A. Kundaje, G. Marinov, 2020, bioRxiv.

Discovery and generalization of tissue structures from spatial omics data.

Monee Y. McGrady, Alexandro E. Trevino, Zhenqin Wu, 2024, Cell reports methods.