Adam J. Rubin

发表

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

Anshul Kundaje, Nicholas A. Sinnott-Armstrong, Howard Y. Chang, 2017 .

HiChIP: efficient and sensitive analysis of protein-directed genome architecture

Howard Y. Chang, Ryan A. Flynn, Adam J. Rubin, 2016, Nature Methods.

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Adam J. Rubin, Garry P. Nolan, G. Nolan, 2020, Cell.

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues

Nicholas A. Sinnott-Armstrong, Howard Y. Chang, Viviana I. Risca, 2017, Nature Methods.

HiChIP: efficient and sensitive analysis of protein-directed genome architecture

Howard Y. Chang, Ryan A. Flynn, Adam J. Rubin, 2016, Nature Methods.

Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements

Howard Y. Chang, Ansuman T. Satpathy, Ryan A. Flynn, 2017, Nature Genetics.

Transcript-indexed ATAC-seq for precision immune profiling

Howard Y. Chang, Mark M. Davis, Alicia N. Schep, 2018, Nature Medicine.

Design, construction and characterization of a set of insulated bacterial promoters

Joseph H. Davis, Robert T. Sauer, Adam J. Rubin, 2010, Nucleic acids research.

The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation

Daniel S. Kim, Howard Y. Chang, Viviana I. Risca, 2020, Nature Genetics.

Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements

Trieu Nguyen, Anshul Kundaje, Howard Y. Chang, 2017, bioRxiv.

Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

Daniel S. Kim, Howard Y. Chang, Adam J. Rubin, 2018, Cell.

Divergent effects of canonical and non‐canonical TGF‐β signalling on mixed contractile‐synthetic smooth muscle cell phenotype in human Marfan syndrome aortic root aneurysms

Adam J. Rubin, M. Fischbein, Grayson Burdon, 2019, Journal of cellular and molecular medicine.

Omni-ATAC-seq: Improved ATAC-seq protocol

Nicholas A. Sinnott-Armstrong, Howard Y. Chang, Viviana I. Risca, 2017 .

464 Dynamic and stable enhancer-promoter contacts regulate epidermal terminal differentiation

Howard Y. Chang, Adam J. Rubin, Maxwell R. Mumbach, 2017 .

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Adam J. Rubin, G. Nolan, J. Lundeberg, 2020, Cell.

Measuring the activity of BioBrick promoters using an in vivo reference standard

Drew Endy, Joseph H. Davis, John Cumbers, 2009, Journal of biological engineering.

Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation

Daniel S. Kim, Howard Y. Chang, Jonathan M. Cairns, 2017, Nature Genetics.

Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks

Ansuman T. Satpathy, Adam J. Rubin, P. Khavari, 2018, Cell.

7SK-BAF axis controls pervasive transcription at enhancers

Howard Y. Chang, Ryan A. Flynn, Adam J. Rubin, 2016, Nature Structural &Molecular Biology.

HiChIRP reveals RNA-associated chromosome conformation

Howard Y. Chang, Ansuman T. Satpathy, Ryan A. Flynn, 2019, Nature Methods.

Retinoic Acid and BMP4 Cooperate with TP63 to alter Chromatin Dynamics during Surface Epithelial Commitment

Howard Y. Chang, Samantha N. Piekos, Eric J. Liaw, 2018, Nature Genetics.

Morphogen-Lineage Selector Interactions During Surface Epithelial Commitment

Howard Y. Chang, Samantha N. Piekos, Eric J. Liaw, 2018, bioRxiv.

A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63

Howard Y. Chang, Adam J. Rubin, P. Giresi, 2015, Genome Biology.

A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63

Howard Y. Chang, Adam J. Rubin, P. Giresi, 2015, Genome Biology.

Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma

Adam J. Rubin, A. Whittemore, A. Uitterlinden, 2020, Nature Communications.

CSNK1a1 Regulates PRMT1 to Maintain the Progenitor State in Self-Renewing Somatic Tissue.

Adam J. Rubin, Z. Siprashvili, Dan E. Webster, 2017, Developmental cell.

HiChIRP reveals RNA-associated chromosome conformation

Howard Y. Chang, Ansuman T. Satpathy, Ryan A. Flynn, 2019, Nature Methods.

Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells.

Daniel S. Kim, Adam J. Rubin, K. Rieger, 2023, The Journal of investigative dermatology.

Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment

Howard Y. Chang, Eric J. Liaw, Adam J. Rubin, 2018, Nature Genetics.

Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma

Adam J. Rubin, A. Whittemore, K. Stefánsson, 2020, Nature Communications.

Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation

Daniel S. Kim, Howard Y. Chang, Jonathan M. Cairns, 2017, Nature Genetics.