Pablo Chacón

发表

Compartimentation in Replicator Models

Federico Morán, Alvaro Moreno, Juan Carlos Nuño, 1995, ECAL.

Structural modeling from electron microscopy data

Pablo Chacón, José Ramón López-Blanco, P. Chacón, 2015 .

DFprot: a webtool for predicting local chain deformability

Ruben Abagyan, Pablo Chacón, José Ignacio Garzón, 2007, Bioinform..

FRODOCK 2.0: fast protein-protein docking server

Pablo Chacón, José Ramón López-Blanco, Erney Ramirez Aportela, 2016, Bioinform..

Grid Multi-Resolution Docking

Eduardo Huedo, Rubén S. Montero, Ignacio Martín Llorente, 2007, 15th EUROMICRO International Conference on Parallel, Distributed and Network-Based Processing (PDP'07).

Exploring Macromolecular Machine Motions

Pablo Chacón, José Ramón López-Blanco, Erney Ramirez, 2013 .

Improving loop modeling prediction

Pablo Chacón, José Ramón López-Blanco, I. Martín-Hernández, 2019 .

Adaptation of a Multi-Resolution Docking Bioinformatics Application to the Grid

Eduardo Huedo, Rubén S. Montero, Ignacio Martín Llorente, 2007, J. Softw..

iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.

Pablo Chacón, José Ramón Lopéz-Blanco, P. Chacón, 2013, Journal of structural biology.

Atomic-level evolutionary information improves protein-protein interface scoring

Pablo Chacón, Chloé Quignot, Raphael Guerois, 2020, bioRxiv.

Imods: Fast Exploration of Macromolecular Collective Motions

Pablo Chacón, José Ramón López-Blanco, Erney Ramirez, 2014 .

Approaching Elastic Network Models to Molecular Dynamics Flexibility.

Modesto Orozco, Pablo Chacón, Laura Orellana, 2010, Journal of chemical theory and computation.

iMODS: internal coordinates normal mode analysis server

Enrique S. Quintana-Ortí, José Ignacio Aliaga, Pablo Chacón, 2014, Nucleic Acids Res..

Normal Mode Analysis Techniques in Structural Biology

Osamu Miyashita, Pablo Chacón, José Ramón López-Blanco, 2014 .

Advances in Artificial Life

Federico Morán, Alvaro Moreno, Alvaro Moreno, 1995, Lecture Notes in Computer Science.

iMod: multipurpose normal mode analysis in internal coordinates

Pablo Chacón, José Ramón López-Blanco, José Ignacio Garzón, 2011, Bioinform..

Topology representing neural networks reconcile biomolecular shape, structure, and dynamics

Florence Tama, Pablo Chacón, Julio A. Kovacs, 2004, Neurocomputing.

KORP: knowledge-based 6D potential for fast protein and loop modeling

Pablo Chacón, José Ramón López-Blanco, P. Chacón, 2019, Bioinform..

Spinor product computations for protein conformations

Pablo Chacón, Pieter Chys, P. Chacón, 2012, J. Comput. Chem..

RCD+: Fast loop modeling server

Pablo Chacón, José Ramón López-Blanco, Yaohang Li, 2016, Nucleic Acids Res..

Random Coordinate Descent with Spinor-matrices and Geometric Filters for Efficient Loop Closure.

Pablo Chacón, Pieter Chys, 2013, Journal of chemical theory and computation.

ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage

Ruben Abagyan, Pablo Chacón, José Ignacio Garzón, 2007, Bioinform..

Easing exhaustive rigid-body, flexible, and loops fitting in UCSF Chimera

Pablo Chacón, José Ramón López-Blanco, 2019 .

End-To-End Cache System for Grid Computing: Design and Efficiency Analysis of a High-Throughput Bioinformatic Docking Application

Eduardo Huedo, Rubén S. Montero, Ignacio Martín Llorente, 2010, Int. J. High Perform. Comput. Appl..

FRODRUG: A Virtual Screening GPU Accelerated Approach for Drug Discovery

Raúl Cabido, Antonio S. Montemayor, Pablo Chacón, 2014, 2014 22nd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing.

Exploring large macromolecular functional motions on clusters of multicore processors

Enrique S. Quintana-Ortí, Rosa M. Badia, José Ignacio Aliaga, 2013, J. Comput. Phys..

A fast band-Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors

Enrique S. Quintana-Ortí, José M. Badía, José Ignacio Aliaga, 2016, J. Comput. Phys..

FRODOCK: a new approach for fast rotational protein-protein docking

Ruben Abagyan, Carles Pons, Juan Fernández-Recio, 2009, Bioinform..

KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions

Pablo Chacón, Sergei Grudinin, Maria Kadukova, 2020, Bioinform..

Atomic-level evolutionary information improves protein-protein interface scoring

Pablo Chacón, Jessica Andreani, Raphaël Guérois, 2021, Bioinform..

The structural basis of flagellin detection by NAIP5: A strategy to limit pathogen immune evasion

Pablo Chacón, José Ramón López-Blanco, Elise Adamson, 2017, Science.

Normal mode analysis of molecular motions in curvilinear coordinates on a non-Eckart body-frame: an application to protein torsion dynamics

Pablo Chacón, Janne Pesonen, Krister O. E. Henriksson, 2012, Journal of Mathematical Chemistry.

DrugScorePPI Knowledge-Based Potentials Used as Scoring and Objective Function in Protein-Protein Docking

Holger Gohlke, Pablo Chacón, Dennis M. Krüger, 2014, PloS one.

Visualization of DNA‐induced conformational changes in the DNA repair kinase DNA‐PKcs

Pablo Chacón, Laurence H Pearl, Oscar Llorca, 2003, The EMBO journal.

Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom.

Pablo Chacón, Willy Wriggers, Julio A Kovacs, 2003, Acta crystallographica. Section D, Biological crystallography.

Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering

Pablo Chacón, Willy Wriggers, P. Chacón, 2001 .

Modeling Tricks and Ways & Means

Pablo Chacón, Willy Wriggers, P. Chacón, 2001 .

Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes.

Pablo Chacón, Sudhakar Jha, Ernesto Arias-Palomo, 2008, Structure.

Towards a Multicomponent Cryo-EM Density Flexible Fitting Tool

Pablo Chacón, José Ramón López-Blanco, David Ritchie, 2017 .

Mega-Dalton biomolecular motion captured from electron microscopy reconstructions.

Florence Tama, Pablo Chacón, Willy Wriggers, 2003, Journal of molecular biology.