Joanne K. Liu

发表

Model-based assessment of mammalian cell metabolic functionalities using omics data

Jill P. Mesirov, Anne Richelle, Nathan E. Lewis, 2021, Cell reports methods.

Networks of energetic and metabolic interactions define dynamics in microbial communities

Joanne K. Liu, K. Zengler, Mahmoud M. Al-Bassam, 2015, Proceedings of the National Academy of Sciences.

GABA Modulating Bacteria of the Human Gut Microbiota

Karsten Zengler, Rob Knight, Conor Liston, 2018, Nature Microbiology.

What does your cell really do? Model-based assessment of mammalian cells metabolic functionalities using omics data

Jill P. Mesirov, Anne Richelle, Nathan E. Lewis, 2020, bioRxiv.

A computational framework for genome-scale models of metabolism and gene expression.

Edward J. O'Brien, Zachary A. King, Joanne K. Liu, 2018 .

Recon 2.2: from reconstruction to model of human metabolism

Neil Swainston, Douglas B. Kell, Nathan E. Lewis, 2016, Metabolomics.

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Edward J. O'Brien, Bernhard O. Palsson, Zachary A. King, 2017, bioRxiv.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Joshua A. Lerman, Adam M. Feist, 2014, BMC Systems Biology.

Predicting proteome allocation, overflow metabolism, and metal requirements in a model acetogen

Ali Ebrahim, Karsten Zengler, Connor A. Olson, 2019, PLoS Comput. Biol..

COBRAme: A computational framework for genome-scale models of metabolism and gene expression

Edward J. O'Brien, Zachary A. King, Joanne K. Liu, 2018, PLoS Comput. Biol..

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale

Edward J. O'Brien, Adam M. Feist, Joanne K. Liu, 2014, BMC Systems Biology.

COBRAme: A Computational Framework for Genome-Scale Models of Metabolism and Gene Expression

Edward J. O'Brien, Bernhard O. Palsson, Zachary A. King, 2017, bioRxiv.