Joaquin Dopazo

发表

Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

Carlos Loucera, Pelin Gundogdu, Inmaculada Alamo-Alvarez, 2021, BioData Mining.

Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer

Carlos Loucera, Joaquin Dopazo, Carlos S Casimiro-Soriguer, 2021, Scientific Reports.

Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach

Joaquin Dopazo, J. Dopazo, 1994, Journal of Molecular Evolution.

Differential Lipid Partitioning Between Adipocytes and Tissue Macrophages Modulates Macrophage Lipotoxicity and M2/M1 Polarization in Obese Mice

David Montaner, Nuria Barbarroja, Matej Orešič, 2011, Diabetes.

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

Rafael C. Jimenez, Gustavo A. Salazar, Manuel Corpas, 2011, PloS one.

Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity

Francisco Salavert, Alicia Amadoz, Joaquin Dopazo, 2015, Scientific Reports.

Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)

Jonathan M. Mudge, Jennifer Harrow, Roderic Guigó, 2016, Nature Communications.

The role of the interactome in the maintenance of deleterious variability in human populations

Joaquin Dopazo, Guillermo Antiñolo, Javier Santoyo-Lopez, 2014, Molecular systems biology.

High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

Francisco Salavert, Cankut Cubuk, Alicia Amadoz, 2016, bioRxiv.

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

Hiroaki Kitano, Egon L. Willighagen, Olaf Wolkenhauer, 2020, Scientific Data.

Monte Carlo simulation in phylogenies: An application to test the constancy of evolutionary rates

Joaquin Dopazo, J. Dopazo, Jose Carlos Adell, 1994, Journal of Molecular Evolution.

Whole-exome sequencing identifies novel compound heterozygous mutations in USH2A in Spanish patients with autosomal recessive retinitis pigmentosa

Francisco J. López-Domingo, Joaquin Dopazo, Salud Borrego, 2013, Molecular vision.

Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli.

Fátima Al-Shahrour, Joaquin Dopazo, J. Dopazo, 2009, Microbiology.

Self‐organizing tree‐growing network for the classification of protein sequences

Joaquin Dopazo, J. Dopazo, J. Carazo, 1998, Protein science : a publication of the Protein Society.

Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus.

Fatima Al-Shahrour, Esteban Ballestar, Reiner Siebert, 2010, Genome research.

A predictor based on the somatic genomic changes of the BRCA1/BRCA2 breast cancer tumors identifies the non-BRCA1/BRCA2 tumors with BRCA1 promoter hypermethylation.

Ana Osorio, Javier Benitez, Ramon Diaz-Uriarte, 2005, Clinical cancer research : an official journal of the American Association for Cancer Research.

Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions

Modesto Orozco, Juan M. Vaquerizas, Joaquin Dopazo, 2006, BMC Genomics.

Identification of overexpressed genes in frequently gained/amplified chromosome regions in multiple myeloma.

Borja Saez, Reiner Siebert, Sara Alvarez, 2006, Haematologica.

Comparing bacterial genomes through conservation profiles.

Maria J Martin, Javier Herrero, Joaquin Dopazo, 2003, Genome research.

Identification of epistatic interactions through genome-wide association studies in sporadic medullary and juvenile papillary thyroid carcinomas

Cristina Y. González, Ignacio Medina, Marta Bleda, 2015, BMC Medical Genomics.