Jean-François Flot

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms

Nadège Guiglielmoni, Antoine Houtain, Alessandro Derzelle, 2021, BMC Bioinform..

Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures

Romain Koszul, Jean-François Flot, R. Koszul, 2015, FEBS letters.

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

Mario Stanke, Donna M. Muzny, Sam Griffiths-Jones, 2017, BMC Biology.

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms

Romain Koszul, Axel Cournac, Martial Marbouty, 2014, eLife.

High-quality genome (re)assembly using chromosomal contact data

Antoine Margeot, Christophe Zimmer, Romain Koszul, 2014, Nature Communications.

Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.

Pierre Peterlongo, Antoine Limasset, Jean-François Flot, 2019, Bioinformatics.