Yunping Zhu

发表

[Advances in the research of extracellular matrix protein prediction tools].

Binghui Liu, Jie Ma, Yunping Zhu, 2019, Sheng wu gong cheng xue bao = Chinese journal of biotechnology.

A Deep Learning‐Based Tumor Classifier Directly Using MS Raw Data

Cheng Chang, Kunxian Shu, Yunping Zhu, 2020, Proteomics.

The HUPO-PSI standardized spectral library format

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020 .

Using NMFAS to identify key biological pathways associated with human diseases

Dong Li, Qijun Liu, Yunping Zhu, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

A Protein Identification Algorithm Optimization for Mass Spectrometry Data using Deep Learning

Rui Xu, Cheng Chang, Mingze Bai, 2020, 2020 3rd International Conference on Advanced Electronic Materials, Computers and Software Engineering (AEMCSE).

Comparison and evaluation of network clustering algorithms applied to genetic interaction networks.

Lin Wang, Arthur Berg, Lin Hou, 2012 .

ECMPride: prediction of human extracellular matrix proteins based on the ideal dataset using hybrid features with domain evidence

Jie Ma, Binghui Liu, Yunping Zhu, 2020, PeerJ.

Universal Spectrum Identifier for mass spectra

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020, Nature Methods.

A Comprehensive Evaluation of MS/MS Spectrum Prediction Tools for Shotgun Proteomics

Rui Xu, Cheng Chang, Mingze Bai, 2020, Proteomics.

A Complete CPU-FPGA Architecture for Protein Identification with Tandem Mass Spectrometry

Xuegong Zhou, Lingli Wang, Yunping Zhu, 2019, 2019 International Conference on Field-Programmable Technology (ICFPT).

Systematic analysis of missing proteins provides clues to help define all of the protein-coding genes on human chromosome 1.

Tao Zhang, Cheng Chang, Qing-Yu He, 2014, Journal of proteome research.

Modified spectral count index (mSCI) for estimation of protein abundance by protein relative identification possibility (RIPpro): a new proteomic technological parameter.

Fuchu He, Yunping Zhu, Dong Yang, 2009, Journal of proteome research.

Identification of Genetic Variants in Base Excision Repair Pathway and Their Associations with Risk of Esophageal Squamous Cell Carcinoma

Wen Tan, Yi Li, Fuchu He, 2004, Cancer Research.

A Dataset of Human Fetal Liver Proteome Identified by Subcellular Fractionation and Multiple Protein Separation and Identification Technology*S

Ping Wan, Fuchu He, Yunping Zhu, 2006, Molecular & Cellular Proteomics.

Liverbase: a comprehensive view of human liver biology.

Hao Li, Wei Tong, Qijun Liu, 2010, Journal of proteome research.

MetaGen : a Promising Tool for Modeling Metabolic Networks From KEGG*: MetaGen : a Promising Tool for Modeling Metabolic Networks From KEGG*

Yunping Zhu, Fu-Chu He, Ting-Ting Zhou, 2010 .

Mining the human plasma proteome with three-dimensional strategies by high-resolution Quadrupole Orbitrap Mass Spectrometry.

Xianyu Li, Cheng Chang, Fuchu He, 2016, Analytica chimica acta.

Proteome-wide Prediction of Signal Flow Direction in Protein Interaction Networks Based on Interacting Domains*

Jian Wang, Fuchu He, Yunping Zhu, 2009, Molecular & Cellular Proteomics.

Association of CYP1A2 genetic polymorphisms with hepatocellular carcinoma susceptibility: a case–control study in a high-risk region of China

Fuchu He, Yunping Zhu, Yun-ping Zhu, 2006, Pharmacogenetics and genomics.

[Applications of meta-analysis in multi-omics].

Yunping Zhu, Mingfei Han, Yun-ping Zhu, 2014, Sheng wu gong cheng xue bao = Chinese journal of biotechnology.

The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics

Yasset Perez-Riverol, Michael J MacCoss, Henning Hermjakob, 2019, Nucleic Acids Res..

LiverAtlas: a unique integrated knowledge database for systems‐level research of liver and hepatic disease

Fuchu He, Yunping Zhu, Mansheng Li, 2013, Liver international : official journal of the International Association for the Study of the Liver.

Systematic analyses of the transcriptome, translatome, and proteome provide a global view and potential strategy for the C-HPP.

Tao Zhang, Cheng Chang, Qing-Yu He, 2014, Journal of proteome research.

Association between Mannose-Binding Lectin Gene Polymorphisms and Susceptibility to Severe Acute Respiratory Syndrome Coronavirus Infection

Fuchu He, Yunping Zhu, Yun-ping Zhu, 2005, The Journal of infectious diseases.

Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs

Lin Hou, Qijun Liu, Fuchu He, 2011, BMC Evolutionary Biology.

Relationship between sample loading amount and peptide identification and its effects on quantitative proteomics.

Fuchu He, Yunping Zhu, Hongwei Xie, 2009, Analytical chemistry.

Omics evidence: single nucleotide variants transmissions on chromosome 20 in liver cancer cell lines.

Cheng Chang, Qing-Yu He, Yunping Zhu, 2014, Journal of proteome research.

The Prediction of Peptide Charge States for Electrospray Ionization in Mass Spectrometry

Yunping Zhu, Hongwei Xie, Han-Chang Sun, 2011 .

Protein probabilities in shotgun proteomics: Evaluating different estimation methods using a semi‐random sampling model

Fuchu He, Yunping Zhu, Songfeng Wu, 2006, Proteomics.

Proteome Analysis of Hepatocellular Carcinoma by Two-dimensional Difference Gel Electrophoresis

Wei Sun, Fuchu He, Yunping Zhu, 2007, Molecular & Cellular Proteomics.

Quantitative and In-Depth Survey of the Isotopic Abundance Distribution Errors in Shotgun Proteomics.

Cheng Chang, Fuchu He, Yunping Zhu, 2016, Analytical chemistry.

Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus

Ping Wan, Fuchu He, Yunping Zhu, 2004, Proteomics.

Multi‐modality of pI distribution in whole proteome

Ping Wan, Fuchu He, Yunping Zhu, 2006, Proteomics.

In-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing values

Cheng Chang, Yunping Zhu, Jujuan Zhuang, 2017, Scientific Reports.

An Integrated Strategy for Functional Analysis in Large-scale Proteomic Research by Gene Ontology

Fuchu He, Yunping Zhu, Songfeng Wu, 2005 .

Prelocabc: A Novel Predictor of Protein Sub-cellular Localization Using a

Fuchu He, Yunping Zhu, Ying Jiang, 2011 .

A Systems Biology-Based Classifier for Hepatocellular Carcinoma Diagnosis

Fuchu He, Yunping Zhu, Yanqiong Zhang, 2011, PloS one.

Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large‐scale organization and robustness

Jian Wang, Ping Wan, Fuchu He, 2006, Proteomics.